Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
Trim28Q62318 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim28Q62318 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim28Q62318 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim28Q62318 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim28Q62318 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim28Q62318 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC26.26■■□□□ 1.79
Trim28Q62318 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC26.26■■□□□ 1.79
Trim28Q62318 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim28Q62318 Snhg20-203ENSMUST00000182811 2153 ntBASIC26.26■■□□□ 1.79
Trim28Q62318 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
Trim28Q62318 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trim28Q62318 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Trim28Q62318 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC26.25■■□□□ 1.79
Trim28Q62318 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim28Q62318 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim28Q62318 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim28Q62318 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim28Q62318 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim28Q62318 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim28Q62318 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
Trim28Q62318 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim28Q62318 Gm10849-201ENSMUST00000100397 618 ntBASIC26.24■■□□□ 1.79
Trim28Q62318 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim28Q62318 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim28Q62318 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC26.24■■□□□ 1.79
Trim28Q62318 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim28Q62318 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
Trim28Q62318 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 Gm26571-201ENSMUST00000181399 666 ntBASIC26.23■■□□□ 1.79
Trim28Q62318 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 AC137127.1-201ENSMUST00000213466 1078 ntBASIC26.23■■□□□ 1.79
Trim28Q62318 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim28Q62318 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Trim28Q62318 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Trim28Q62318 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Trim28Q62318 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim28Q62318 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim28Q62318 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim28Q62318 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim28Q62318 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim28Q62318 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Trim28Q62318 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Trim28Q62318 Gm37035-201ENSMUST00000194809 2148 ntBASIC26.21■■□□□ 1.79
Trim28Q62318 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim28Q62318 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim28Q62318 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trim28Q62318 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC26.2■■□□□ 1.78
Trim28Q62318 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC26.2■■□□□ 1.78
Trim28Q62318 AC099934.2-201ENSMUST00000196389 70 ntBASIC26.2■■□□□ 1.78
Trim28Q62318 AC156953.1-201ENSMUST00000196953 70 ntBASIC26.2■■□□□ 1.78
Trim28Q62318 AC157822.2-201ENSMUST00000200291 70 ntBASIC26.2■■□□□ 1.78
Trim28Q62318 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Trim28Q62318 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trim28Q62318 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trim28Q62318 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trim28Q62318 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Trim28Q62318 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
Trim28Q62318 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC26.19■■□□□ 1.78
Trim28Q62318 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC26.19■■□□□ 1.78
Trim28Q62318 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Trim28Q62318 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC26.19■■□□□ 1.78
Trim28Q62318 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
Trim28Q62318 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim28Q62318 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Trim28Q62318 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim28Q62318 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
Trim28Q62318 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim28Q62318 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim28Q62318 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
Trim28Q62318 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim28Q62318 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim28Q62318 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim28Q62318 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Trim28Q62318 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim28Q62318 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim28Q62318 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC26.16■■□□□ 1.78
Trim28Q62318 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim28Q62318 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim28Q62318 AC152827.1-201ENSMUST00000221143 2189 ntBASIC26.16■■□□□ 1.78
Trim28Q62318 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
Trim28Q62318 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trim28Q62318 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC26.15■■□□□ 1.78
Trim28Q62318 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trim28Q62318 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC26.15■■□□□ 1.78
Trim28Q62318 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trim28Q62318 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
Trim28Q62318 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Trim28Q62318 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC26.14■■□□□ 1.78
Trim28Q62318 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC26.14■■□□□ 1.78
Trim28Q62318 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC26.14■■□□□ 1.78
Trim28Q62318 Gm14281-201ENSMUST00000121700 1294 ntBASIC26.13■■□□□ 1.77
Trim28Q62318 Gm42642-201ENSMUST00000200683 355 ntBASIC26.13■■□□□ 1.77
Trim28Q62318 Gm10033-202ENSMUST00000211874 928 ntBASIC26.13■■□□□ 1.77
Trim28Q62318 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim28Q62318 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 188.2 ms