Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Col11a1Q61245 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Col11a1Q61245 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Col11a1Q61245 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Col11a1Q61245 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Col11a1Q61245 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
Col11a1Q61245 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Col11a1Q61245 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC22.84■■□□□ 1.25
Col11a1Q61245 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC22.84■■□□□ 1.25
Col11a1Q61245 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
Col11a1Q61245 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Col11a1Q61245 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
Col11a1Q61245 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC22.83■■□□□ 1.25
Col11a1Q61245 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC22.83■■□□□ 1.25
Col11a1Q61245 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC22.83■■□□□ 1.25
Col11a1Q61245 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Col11a1Q61245 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
Col11a1Q61245 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Col11a1Q61245 Gm13168-201ENSMUST00000121771 632 ntBASIC22.82■■□□□ 1.24
Col11a1Q61245 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC22.82■■□□□ 1.24
Col11a1Q61245 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC22.82■■□□□ 1.24
Col11a1Q61245 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC22.82■■□□□ 1.24
Col11a1Q61245 Gm5408-201ENSMUST00000197998 747 ntBASIC22.82■■□□□ 1.24
Col11a1Q61245 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
Col11a1Q61245 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Col11a1Q61245 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Col11a1Q61245 Gm5913-201ENSMUST00000119397 1399 ntBASIC22.82■■□□□ 1.24
Col11a1Q61245 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Col11a1Q61245 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Col11a1Q61245 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col11a1Q61245 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC22.81■■□□□ 1.24
Col11a1Q61245 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Col11a1Q61245 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col11a1Q61245 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col11a1Q61245 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Col11a1Q61245 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Col11a1Q61245 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 Gm13146-201ENSMUST00000118508 780 ntBASIC22.8■■□□□ 1.24
Col11a1Q61245 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 Gm6211-202ENSMUST00000167849 925 ntBASIC22.8■■□□□ 1.24
Col11a1Q61245 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC22.8■■□□□ 1.24
Col11a1Q61245 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 H3f3aos-201ENSMUST00000097448 2905 ntBASIC22.8■■□□□ 1.24
Col11a1Q61245 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
Col11a1Q61245 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Col11a1Q61245 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Col11a1Q61245 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Col11a1Q61245 CT010467.1-202ENSMUST00000205406 714 ntBASIC22.79■■□□□ 1.24
Col11a1Q61245 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
Col11a1Q61245 Gm43403-201ENSMUST00000198011 1786 ntBASIC22.79■■□□□ 1.24
Col11a1Q61245 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Col11a1Q61245 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Col11a1Q61245 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC22.78■■□□□ 1.24
Col11a1Q61245 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 Gm8520-201ENSMUST00000186517 868 ntBASIC22.78■■□□□ 1.24
Col11a1Q61245 Gm26524-201ENSMUST00000192339 390 ntBASIC22.78■■□□□ 1.24
Col11a1Q61245 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Col11a1Q61245 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC22.77■■□□□ 1.24
Col11a1Q61245 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Col11a1Q61245 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Col11a1Q61245 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Col11a1Q61245 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Col11a1Q61245 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC22.77■■□□□ 1.24
Col11a1Q61245 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Col11a1Q61245 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Col11a1Q61245 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC22.76■■□□□ 1.23
Col11a1Q61245 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC22.76■■□□□ 1.23
Col11a1Q61245 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC22.76■■□□□ 1.23
Col11a1Q61245 AC122769.4-201ENSMUST00000228166 901 ntBASIC22.76■■□□□ 1.23
Col11a1Q61245 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Col11a1Q61245 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Col11a1Q61245 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Col11a1Q61245 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC22.76■■□□□ 1.23
Col11a1Q61245 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC22.75■■□□□ 1.23
Col11a1Q61245 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Col11a1Q61245 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Col11a1Q61245 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Col11a1Q61245 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC22.75■■□□□ 1.23
Col11a1Q61245 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC22.75■■□□□ 1.23
Col11a1Q61245 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Col11a1Q61245 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Col11a1Q61245 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
Col11a1Q61245 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC22.74■■□□□ 1.23
Col11a1Q61245 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC22.74■■□□□ 1.23
Col11a1Q61245 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC22.74■■□□□ 1.23
Col11a1Q61245 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Col11a1Q61245 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
Col11a1Q61245 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Col11a1Q61245 Gm7290-201ENSMUST00000104990 617 ntBASIC22.73■■□□□ 1.23
Col11a1Q61245 Gm12918-201ENSMUST00000120234 636 ntBASIC22.73■■□□□ 1.23
Col11a1Q61245 Gm15710-201ENSMUST00000121821 636 ntBASIC22.73■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms