Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Usf1Q61069 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.25■□□□□ 0.51
Usf1Q61069 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Usf1Q61069 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usf1Q61069 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Usf1Q61069 Mir5133-201ENSMUST00000174955 77 ntBASIC18.24■□□□□ 0.51
Usf1Q61069 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Usf1Q61069 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usf1Q61069 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC18.24■□□□□ 0.51
Usf1Q61069 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
Usf1Q61069 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Usf1Q61069 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Usf1Q61069 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usf1Q61069 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usf1Q61069 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Usf1Q61069 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Usf1Q61069 Gm10653-202ENSMUST00000139570 835 ntBASIC18.23■□□□□ 0.51
Usf1Q61069 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.23■□□□□ 0.51
Usf1Q61069 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Usf1Q61069 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.22■□□□□ 0.51
Usf1Q61069 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.22■□□□□ 0.51
Usf1Q61069 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.22■□□□□ 0.51
Usf1Q61069 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Usf1Q61069 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Usf1Q61069 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.21■□□□□ 0.51
Usf1Q61069 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Usf1Q61069 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usf1Q61069 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usf1Q61069 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC18.2■□□□□ 0.5
Usf1Q61069 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usf1Q61069 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Usf1Q61069 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usf1Q61069 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Usf1Q61069 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usf1Q61069 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usf1Q61069 Gm5913-201ENSMUST00000119397 1399 ntBASIC18.19■□□□□ 0.5
Usf1Q61069 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Usf1Q61069 Gm42555-201ENSMUST00000199304 1039 ntBASIC18.19■□□□□ 0.5
Usf1Q61069 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Usf1Q61069 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usf1Q61069 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.19■□□□□ 0.5
Usf1Q61069 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usf1Q61069 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.19■□□□□ 0.5
Usf1Q61069 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Usf1Q61069 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usf1Q61069 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usf1Q61069 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usf1Q61069 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Usf1Q61069 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
Usf1Q61069 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.18■□□□□ 0.5
Usf1Q61069 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.18■□□□□ 0.5
Usf1Q61069 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Usf1Q61069 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.17■□□□□ 0.5
Usf1Q61069 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Usf1Q61069 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Usf1Q61069 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.17■□□□□ 0.5
Usf1Q61069 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usf1Q61069 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Usf1Q61069 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Usf1Q61069 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usf1Q61069 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usf1Q61069 Gm10571-201ENSMUST00000097869 1638 ntBASIC18.16■□□□□ 0.5
Usf1Q61069 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Usf1Q61069 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
Usf1Q61069 Gm4968-201ENSMUST00000071458 858 ntBASIC18.16■□□□□ 0.5
Usf1Q61069 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usf1Q61069 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Usf1Q61069 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Usf1Q61069 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usf1Q61069 AC153962.1-201ENSMUST00000218530 1948 ntBASIC18.15■□□□□ 0.5
Usf1Q61069 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usf1Q61069 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.15■□□□□ 0.5
Usf1Q61069 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usf1Q61069 Gm22240-201ENSMUST00000175225 82 ntBASIC18.15■□□□□ 0.5
Usf1Q61069 Gm20760-201ENSMUST00000179197 648 ntBASIC18.15■□□□□ 0.5
Usf1Q61069 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Usf1Q61069 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Usf1Q61069 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Usf1Q61069 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usf1Q61069 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usf1Q61069 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Usf1Q61069 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Usf1Q61069 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Usf1Q61069 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms