Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav3-1Q5R1I8 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav3-1Q5R1I8 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Trav3-1Q5R1I8 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav3-1Q5R1I8 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trav3-1Q5R1I8 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC13.58□□□□□ -0.24
Trav3-1Q5R1I8 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trav3-1Q5R1I8 AC152827.1-201ENSMUST00000221143 2189 ntBASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Gm37035-201ENSMUST00000194809 2148 ntBASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC13.56□□□□□ -0.24
Trav3-1Q5R1I8 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Trav3-1Q5R1I8 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Trav3-1Q5R1I8 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Gm5131-201ENSMUST00000212776 1238 ntBASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Trav3-1Q5R1I8 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Trav3-1Q5R1I8 Gm43231-201ENSMUST00000202960 2258 ntBASIC13.52□□□□□ -0.24
Trav3-1Q5R1I8 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Trav3-1Q5R1I8 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
Trav3-1Q5R1I8 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms