Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Upf3aQ3ULJ3 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3aQ3ULJ3 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
Upf3aQ3ULJ3 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.08■□□□□ 0.97
Upf3aQ3ULJ3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.08■□□□□ 0.97
Upf3aQ3ULJ3 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3aQ3ULJ3 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Upf3aQ3ULJ3 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Upf3aQ3ULJ3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Upf3aQ3ULJ3 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Gm13234-201ENSMUST00000120010 747 ntBASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Gm27801-201ENSMUST00000184174 223 ntBASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Upf3aQ3ULJ3 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Gm27011-201ENSMUST00000182352 972 ntBASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Upf3aQ3ULJ3 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Reep4-203ENSMUST00000226563 1444 ntBASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Upf3aQ3ULJ3 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3aQ3ULJ3 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3aQ3ULJ3 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Upf3aQ3ULJ3 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3aQ3ULJ3 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Upf3aQ3ULJ3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Gm12933-201ENSMUST00000120203 872 ntBASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Upf3aQ3ULJ3 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3aQ3ULJ3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Upf3aQ3ULJ3 Gm10602-201ENSMUST00000098239 609 ntBASIC21.01■□□□□ 0.95
Upf3aQ3ULJ3 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21■□□□□ 0.95
Upf3aQ3ULJ3 Gm10571-201ENSMUST00000097869 1638 ntBASIC21■□□□□ 0.95
Upf3aQ3ULJ3 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC21■□□□□ 0.95
Upf3aQ3ULJ3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21■□□□□ 0.95
Upf3aQ3ULJ3 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21■□□□□ 0.95
Upf3aQ3ULJ3 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Upf3aQ3ULJ3 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21■□□□□ 0.95
Upf3aQ3ULJ3 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.99■□□□□ 0.95
Upf3aQ3ULJ3 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Upf3aQ3ULJ3 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms