Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Limch1Q3UH68 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC23.44■■□□□ 1.34
Limch1Q3UH68 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Limch1Q3UH68 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
Limch1Q3UH68 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC23.43■■□□□ 1.34
Limch1Q3UH68 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Limch1Q3UH68 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Limch1Q3UH68 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.34
Limch1Q3UH68 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Limch1Q3UH68 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Limch1Q3UH68 AC166356.1-201ENSMUST00000228236 1426 ntBASIC23.42■■□□□ 1.34
Limch1Q3UH68 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC23.42■■□□□ 1.34
Limch1Q3UH68 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Limch1Q3UH68 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC23.41■■□□□ 1.34
Limch1Q3UH68 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC23.41■■□□□ 1.34
Limch1Q3UH68 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC23.41■■□□□ 1.34
Limch1Q3UH68 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC23.41■■□□□ 1.34
Limch1Q3UH68 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Limch1Q3UH68 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC23.41■■□□□ 1.34
Limch1Q3UH68 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC23.4■■□□□ 1.34
Limch1Q3UH68 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Gm9870-201ENSMUST00000063874 645 ntBASIC23.4■■□□□ 1.34
Limch1Q3UH68 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Limch1Q3UH68 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Limch1Q3UH68 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC23.39■■□□□ 1.33
Limch1Q3UH68 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Limch1Q3UH68 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Limch1Q3UH68 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Limch1Q3UH68 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC23.39■■□□□ 1.33
Limch1Q3UH68 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Limch1Q3UH68 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Limch1Q3UH68 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
Limch1Q3UH68 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC23.36■■□□□ 1.33
Limch1Q3UH68 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Limch1Q3UH68 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Limch1Q3UH68 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
Limch1Q3UH68 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms