Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.27■□□□□ 0.68
Col28a1Q2UY11 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.27■□□□□ 0.67
Col28a1Q2UY11 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col28a1Q2UY11 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Col28a1Q2UY11 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Col28a1Q2UY11 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col28a1Q2UY11 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col28a1Q2UY11 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col28a1Q2UY11 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.22■□□□□ 0.67
Col28a1Q2UY11 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.22■□□□□ 0.67
Col28a1Q2UY11 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.22■□□□□ 0.67
Col28a1Q2UY11 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col28a1Q2UY11 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Col28a1Q2UY11 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col28a1Q2UY11 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col28a1Q2UY11 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col28a1Q2UY11 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col28a1Q2UY11 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col28a1Q2UY11 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col28a1Q2UY11 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.18■□□□□ 0.66
Col28a1Q2UY11 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Col28a1Q2UY11 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms