Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Sox9Q04887 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Sox9Q04887 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Sox9Q04887 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Sox9Q04887 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Sox9Q04887 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC20.74■□□□□ 0.91
Sox9Q04887 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Sox9Q04887 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.73■□□□□ 0.91
Sox9Q04887 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Sox9Q04887 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.73■□□□□ 0.91
Sox9Q04887 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC20.73■□□□□ 0.91
Sox9Q04887 AC130671.1-201ENSMUST00000227384 1237 ntBASIC20.73■□□□□ 0.91
Sox9Q04887 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.73■□□□□ 0.91
Sox9Q04887 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Sox9Q04887 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.73■□□□□ 0.91
Sox9Q04887 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.72■□□□□ 0.91
Sox9Q04887 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.72■□□□□ 0.91
Sox9Q04887 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Sox9Q04887 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sox9Q04887 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sox9Q04887 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.71■□□□□ 0.91
Sox9Q04887 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sox9Q04887 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Sox9Q04887 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sox9Q04887 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Sox9Q04887 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.71■□□□□ 0.91
Sox9Q04887 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 Gm13148-201ENSMUST00000118892 745 ntBASIC20.7■□□□□ 0.9
Sox9Q04887 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 Gm20049-201ENSMUST00000219950 730 ntBASIC20.7■□□□□ 0.9
Sox9Q04887 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Sox9Q04887 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.69■□□□□ 0.9
Sox9Q04887 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.69■□□□□ 0.9
Sox9Q04887 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC20.69■□□□□ 0.9
Sox9Q04887 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Sox9Q04887 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
Sox9Q04887 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Sox9Q04887 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox9Q04887 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Sox9Q04887 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox9Q04887 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.68■□□□□ 0.9
Sox9Q04887 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox9Q04887 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Sox9Q04887 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Sox9Q04887 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox9Q04887 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox9Q04887 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.67■□□□□ 0.9
Sox9Q04887 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC20.67■□□□□ 0.9
Sox9Q04887 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.67■□□□□ 0.9
Sox9Q04887 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sox9Q04887 Gm13836-201ENSMUST00000121159 501 ntBASIC20.66■□□□□ 0.9
Sox9Q04887 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.66■□□□□ 0.9
Sox9Q04887 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sox9Q04887 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.66■□□□□ 0.9
Sox9Q04887 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox9Q04887 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sox9Q04887 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.66■□□□□ 0.9
Sox9Q04887 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox9Q04887 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sox9Q04887 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox9Q04887 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Sox9Q04887 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.65■□□□□ 0.9
Sox9Q04887 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox9Q04887 Gm7290-201ENSMUST00000104990 617 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Gm12918-201ENSMUST00000120234 636 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Gm15710-201ENSMUST00000121821 636 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.65■□□□□ 0.9
Sox9Q04887 Gm5075-201ENSMUST00000196916 622 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Sox9Q04887 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC20.65■□□□□ 0.9
Sox9Q04887 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox9Q04887 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sox9Q04887 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Sox9Q04887 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox9Q04887 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.64■□□□□ 0.89
Sox9Q04887 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox9Q04887 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sox9Q04887 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox9Q04887 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sox9Q04887 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms