Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx3-1P97436 Gm11421-201ENSMUST00000122124 294 ntBASIC17.26■□□□□ 0.35
Nkx3-1P97436 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.26■□□□□ 0.35
Nkx3-1P97436 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx3-1P97436 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx3-1P97436 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Nkx3-1P97436 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC17.26■□□□□ 0.35
Nkx3-1P97436 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Gm18671-201ENSMUST00000214826 683 ntBASIC17.25■□□□□ 0.35
Nkx3-1P97436 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Nkx3-1P97436 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Mir6236-201ENSMUST00000184437 123 ntBASIC17.24■□□□□ 0.35
Nkx3-1P97436 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Nkx3-1P97436 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.23■□□□□ 0.35
Nkx3-1P97436 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Nkx3-1P97436 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Gm42778-201ENSMUST00000199644 553 ntBASIC17.22■□□□□ 0.35
Nkx3-1P97436 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17.22■□□□□ 0.35
Nkx3-1P97436 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.22■□□□□ 0.35
Nkx3-1P97436 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Gm37179-201ENSMUST00000194862 823 ntBASIC17.21■□□□□ 0.35
Nkx3-1P97436 Spcs1-207ENSMUST00000228767 1008 ntBASIC17.21■□□□□ 0.35
Nkx3-1P97436 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Nkx3-1P97436 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Nkx3-1P97436 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Nkx3-1P97436 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Gm10033-202ENSMUST00000211874 928 ntBASIC17.19■□□□□ 0.34
Nkx3-1P97436 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Nkx3-1P97436 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx3-1P97436 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx3-1P97436 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC17.18■□□□□ 0.34
Nkx3-1P97436 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx3-1P97436 AV356131-201ENSMUST00000206201 750 ntBASIC17.18■□□□□ 0.34
Nkx3-1P97436 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx3-1P97436 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC17.18■□□□□ 0.34
Nkx3-1P97436 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx3-1P97436 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Nkx3-1P97436 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Nkx3-1P97436 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Nkx3-1P97436 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Nkx3-1P97436 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.17■□□□□ 0.34
Nkx3-1P97436 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms