Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sox3P53784 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Sox3P53784 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sox3P53784 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Sox3P53784 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Sox3P53784 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Sox3P53784 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sox3P53784 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.98■□□□□ 0.63
Sox3P53784 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.98■□□□□ 0.63
Sox3P53784 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Sox3P53784 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Sox3P53784 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sox3P53784 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sox3P53784 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.97■□□□□ 0.63
Sox3P53784 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.97■□□□□ 0.63
Sox3P53784 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.97■□□□□ 0.63
Sox3P53784 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.97■□□□□ 0.63
Sox3P53784 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Sox3P53784 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Sox3P53784 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Sox3P53784 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sox3P53784 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Sox3P53784 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Sox3P53784 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Sox3P53784 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Sox3P53784 Gm12251-201ENSMUST00000117893 792 ntBASIC18.96■□□□□ 0.63
Sox3P53784 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sox3P53784 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sox3P53784 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Sox3P53784 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC18.96■□□□□ 0.63
Sox3P53784 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sox3P53784 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Sox3P53784 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sox3P53784 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.95■□□□□ 0.62
Sox3P53784 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sox3P53784 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Sox3P53784 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.94■□□□□ 0.62
Sox3P53784 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Sox3P53784 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sox3P53784 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sox3P53784 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sox3P53784 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
Sox3P53784 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sox3P53784 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Sox3P53784 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sox3P53784 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sox3P53784 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sox3P53784 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC18.92■□□□□ 0.62
Sox3P53784 Gm26833-201ENSMUST00000180899 440 ntBASIC18.92■□□□□ 0.62
Sox3P53784 Gm43060-201ENSMUST00000200621 289 ntBASIC18.92■□□□□ 0.62
Sox3P53784 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sox3P53784 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sox3P53784 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox3P53784 Spcs1-204ENSMUST00000226782 949 ntBASIC18.91■□□□□ 0.62
Sox3P53784 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Sox3P53784 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.91■□□□□ 0.62
Sox3P53784 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sox3P53784 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.9■□□□□ 0.62
Sox3P53784 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Sox3P53784 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Sox3P53784 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.9■□□□□ 0.62
Sox3P53784 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sox3P53784 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.9■□□□□ 0.62
Sox3P53784 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Sox3P53784 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
Sox3P53784 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sox3P53784 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.89■□□□□ 0.61
Sox3P53784 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.89■□□□□ 0.61
Sox3P53784 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sox3P53784 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sox3P53784 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.89■□□□□ 0.61
Sox3P53784 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.89■□□□□ 0.61
Sox3P53784 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sox3P53784 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sox3P53784 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms