Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cux1P53564 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC31.25■■■□□ 2.59
Cux1P53564 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Cux1P53564 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Cux1P53564 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Cux1P53564 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Cux1P53564 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
Cux1P53564 Gm26766-202ENSMUST00000227544 2347 ntBASIC31.23■■■□□ 2.59
Cux1P53564 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Cux1P53564 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
Cux1P53564 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Cux1P53564 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC31.21■■■□□ 2.59
Cux1P53564 Gm10571-201ENSMUST00000097869 1638 ntBASIC31.21■■■□□ 2.59
Cux1P53564 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Cux1P53564 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Cux1P53564 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
Cux1P53564 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Cux1P53564 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Cux1P53564 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC31.2■■■□□ 2.58
Cux1P53564 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
Cux1P53564 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.58
Cux1P53564 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
Cux1P53564 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
Cux1P53564 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cux1P53564 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cux1P53564 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
Cux1P53564 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC31.16■■■□□ 2.58
Cux1P53564 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC31.16■■■□□ 2.58
Cux1P53564 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Cux1P53564 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC31.16■■■□□ 2.58
Cux1P53564 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
Cux1P53564 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
Cux1P53564 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Cux1P53564 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Cux1P53564 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC31.15■■■□□ 2.58
Cux1P53564 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC31.15■■■□□ 2.58
Cux1P53564 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
Cux1P53564 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Cux1P53564 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
Cux1P53564 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC31.14■■■□□ 2.58
Cux1P53564 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
Cux1P53564 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC31.14■■■□□ 2.58
Cux1P53564 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC31.14■■■□□ 2.57
Cux1P53564 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
Cux1P53564 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC31.13■■■□□ 2.57
Cux1P53564 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Cux1P53564 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Cux1P53564 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
Cux1P53564 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
Cux1P53564 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC31.12■■■□□ 2.57
Cux1P53564 Gm10602-201ENSMUST00000098239 609 ntBASIC31.12■■■□□ 2.57
Cux1P53564 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
Cux1P53564 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
Cux1P53564 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Cux1P53564 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
Cux1P53564 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
Cux1P53564 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
Cux1P53564 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
Cux1P53564 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cux1P53564 Gm42555-201ENSMUST00000199304 1039 ntBASIC31.1■■■□□ 2.57
Cux1P53564 CT010467.1-202ENSMUST00000205406 714 ntBASIC31.1■■■□□ 2.57
Cux1P53564 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cux1P53564 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
Cux1P53564 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
Cux1P53564 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC31.09■■■□□ 2.57
Cux1P53564 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
Cux1P53564 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC31.09■■■□□ 2.57
Cux1P53564 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC31.08■■■□□ 2.57
Cux1P53564 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cux1P53564 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cux1P53564 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cux1P53564 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cux1P53564 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC31.08■■■□□ 2.57
Cux1P53564 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
Cux1P53564 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
Cux1P53564 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC31.08■■■□□ 2.57
Cux1P53564 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC31.08■■■□□ 2.57
Cux1P53564 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC31.07■■■□□ 2.56
Cux1P53564 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC31.06■■■□□ 2.56
Cux1P53564 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
Cux1P53564 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC31.06■■■□□ 2.56
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms