Protein–RNA interactions for Protein: P50405

Sftpb, Pulmonary surfactant-associated protein B, mousemouse

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SftpbP50405 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SftpbP50405 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SftpbP50405 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SftpbP50405 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.36■□□□□ 0.85
SftpbP50405 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
SftpbP50405 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.34■□□□□ 0.85
SftpbP50405 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SftpbP50405 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SftpbP50405 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SftpbP50405 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SftpbP50405 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SftpbP50405 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SftpbP50405 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SftpbP50405 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SftpbP50405 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SftpbP50405 Gm40881-201ENSMUST00000223397 166 ntBASIC20.33■□□□□ 0.85
SftpbP50405 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SftpbP50405 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SftpbP50405 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SftpbP50405 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SftpbP50405 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.32■□□□□ 0.84
SftpbP50405 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SftpbP50405 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.32■□□□□ 0.84
SftpbP50405 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SftpbP50405 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SftpbP50405 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SftpbP50405 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SftpbP50405 Gm7143-201ENSMUST00000222811 859 ntBASIC20.31■□□□□ 0.84
SftpbP50405 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.31■□□□□ 0.84
SftpbP50405 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.31■□□□□ 0.84
SftpbP50405 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SftpbP50405 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SftpbP50405 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
SftpbP50405 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.3■□□□□ 0.84
SftpbP50405 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.3■□□□□ 0.84
SftpbP50405 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SftpbP50405 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SftpbP50405 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SftpbP50405 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SftpbP50405 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.29■□□□□ 0.84
SftpbP50405 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SftpbP50405 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SftpbP50405 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SftpbP50405 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SftpbP50405 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.28■□□□□ 0.84
SftpbP50405 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SftpbP50405 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SftpbP50405 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SftpbP50405 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.28■□□□□ 0.84
SftpbP50405 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SftpbP50405 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.27■□□□□ 0.84
SftpbP50405 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SftpbP50405 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SftpbP50405 Gm10616-201ENSMUST00000205285 2127 ntBASIC20.27■□□□□ 0.84
SftpbP50405 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SftpbP50405 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.27■□□□□ 0.84
SftpbP50405 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SftpbP50405 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SftpbP50405 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
SftpbP50405 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SftpbP50405 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
SftpbP50405 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SftpbP50405 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.26■□□□□ 0.83
SftpbP50405 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SftpbP50405 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SftpbP50405 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SftpbP50405 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.26■□□□□ 0.83
SftpbP50405 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.26■□□□□ 0.83
SftpbP50405 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SftpbP50405 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms