Protein–RNA interactions for Protein: P48540

Gdnf, Glial cell line-derived neurotrophic factor, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GdnfP48540 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
GdnfP48540 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
GdnfP48540 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.34■□□□□ 0.37
GdnfP48540 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
GdnfP48540 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.34■□□□□ 0.37
GdnfP48540 AC116713.1-201ENSMUST00000215074 430 ntBASIC17.34■□□□□ 0.37
GdnfP48540 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
GdnfP48540 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
GdnfP48540 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
GdnfP48540 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
GdnfP48540 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
GdnfP48540 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
GdnfP48540 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
GdnfP48540 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
GdnfP48540 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
GdnfP48540 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
GdnfP48540 Gm15546-201ENSMUST00000122095 826 ntBASIC17.33■□□□□ 0.36
GdnfP48540 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC17.33■□□□□ 0.36
GdnfP48540 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
GdnfP48540 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
GdnfP48540 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
GdnfP48540 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
GdnfP48540 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.32■□□□□ 0.36
GdnfP48540 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC17.32■□□□□ 0.36
GdnfP48540 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
GdnfP48540 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC17.32■□□□□ 0.36
GdnfP48540 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC17.32■□□□□ 0.36
GdnfP48540 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
GdnfP48540 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
GdnfP48540 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
GdnfP48540 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
GdnfP48540 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.31■□□□□ 0.36
GdnfP48540 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
GdnfP48540 Gm10620-201ENSMUST00000098379 1332 ntBASIC17.31■□□□□ 0.36
GdnfP48540 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Gm18755-201ENSMUST00000218030 1099 ntBASIC17.31■□□□□ 0.36
GdnfP48540 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
GdnfP48540 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
GdnfP48540 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC17.3■□□□□ 0.36
GdnfP48540 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.3■□□□□ 0.36
GdnfP48540 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
GdnfP48540 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
GdnfP48540 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC17.29■□□□□ 0.36
GdnfP48540 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC17.29■□□□□ 0.36
GdnfP48540 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
GdnfP48540 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC17.29■□□□□ 0.36
GdnfP48540 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
GdnfP48540 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC17.28■□□□□ 0.36
GdnfP48540 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
GdnfP48540 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC17.28■□□□□ 0.36
GdnfP48540 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
GdnfP48540 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
GdnfP48540 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.27■□□□□ 0.36
GdnfP48540 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
GdnfP48540 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.35
GdnfP48540 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
GdnfP48540 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
GdnfP48540 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms