Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
HttP42859 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HttP42859 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
HttP42859 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HttP42859 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
HttP42859 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC21.82■■□□□ 1.08
HttP42859 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
HttP42859 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC21.82■■□□□ 1.08
HttP42859 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC21.82■■□□□ 1.08
HttP42859 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
HttP42859 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
HttP42859 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HttP42859 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.81■■□□□ 1.08
HttP42859 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HttP42859 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC21.81■■□□□ 1.08
HttP42859 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
HttP42859 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.81■■□□□ 1.08
HttP42859 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC21.81■■□□□ 1.08
HttP42859 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HttP42859 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HttP42859 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HttP42859 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.8■■□□□ 1.08
HttP42859 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HttP42859 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.8■■□□□ 1.08
HttP42859 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HttP42859 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
HttP42859 Gm715-201ENSMUST00000117865 831 ntBASIC21.8■■□□□ 1.08
HttP42859 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HttP42859 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
HttP42859 Gm7290-201ENSMUST00000104990 617 ntBASIC21.79■■□□□ 1.08
HttP42859 Gm12918-201ENSMUST00000120234 636 ntBASIC21.79■■□□□ 1.08
HttP42859 Gm15710-201ENSMUST00000121821 636 ntBASIC21.79■■□□□ 1.08
HttP42859 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.79■■□□□ 1.08
HttP42859 Gm5075-201ENSMUST00000196916 622 ntBASIC21.79■■□□□ 1.08
HttP42859 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.79■■□□□ 1.08
HttP42859 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC21.79■■□□□ 1.08
HttP42859 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC21.79■■□□□ 1.08
HttP42859 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HttP42859 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HttP42859 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
HttP42859 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HttP42859 Krtap5-1-202ENSMUST00000188274 742 ntBASIC21.78■■□□□ 1.08
HttP42859 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.77■■□□□ 1.08
HttP42859 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HttP42859 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
HttP42859 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HttP42859 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Gm15565-201ENSMUST00000118890 427 ntBASIC21.76■■□□□ 1.07
HttP42859 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC21.76■■□□□ 1.07
HttP42859 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC21.76■■□□□ 1.07
HttP42859 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HttP42859 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC21.75■■□□□ 1.07
HttP42859 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HttP42859 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HttP42859 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HttP42859 Gm27275-201ENSMUST00000184318 272 ntBASIC21.75■■□□□ 1.07
HttP42859 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.75■■□□□ 1.07
HttP42859 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HttP42859 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HttP42859 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HttP42859 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.74■■□□□ 1.07
HttP42859 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
HttP42859 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HttP42859 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.74■■□□□ 1.07
HttP42859 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HttP42859 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC21.73■■□□□ 1.07
HttP42859 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
HttP42859 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HttP42859 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HttP42859 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC21.73■■□□□ 1.07
HttP42859 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HttP42859 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HttP42859 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HttP42859 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC21.73■■□□□ 1.07
HttP42859 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HttP42859 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HttP42859 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.72■■□□□ 1.07
HttP42859 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HttP42859 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HttP42859 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HttP42859 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HttP42859 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HttP42859 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.71■■□□□ 1.07
HttP42859 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.71■■□□□ 1.07
HttP42859 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HttP42859 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HttP42859 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HttP42859 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC21.71■■□□□ 1.07
HttP42859 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms