Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Msx1P13297 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Msx1P13297 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.84■□□□□ 0.61
Msx1P13297 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Msx1P13297 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
Msx1P13297 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msx1P13297 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Msx1P13297 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC18.83■□□□□ 0.61
Msx1P13297 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Msx1P13297 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.83■□□□□ 0.61
Msx1P13297 Gm42569-201ENSMUST00000200539 472 ntBASIC18.83■□□□□ 0.6
Msx1P13297 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.83■□□□□ 0.6
Msx1P13297 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx1P13297 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx1P13297 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Msx1P13297 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Msx1P13297 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Msx1P13297 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Msx1P13297 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Gm12251-201ENSMUST00000117893 792 ntBASIC18.82■□□□□ 0.6
Msx1P13297 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Gm27405-201ENSMUST00000184201 112 ntBASIC18.82■□□□□ 0.6
Msx1P13297 Cdc34b-202ENSMUST00000188741 1252 ntBASIC18.82■□□□□ 0.6
Msx1P13297 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Msx1P13297 Gm7143-201ENSMUST00000222811 859 ntBASIC18.82■□□□□ 0.6
Msx1P13297 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC18.82■□□□□ 0.6
Msx1P13297 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
Msx1P13297 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Msx1P13297 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Msx1P13297 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Msx1P13297 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Msx1P13297 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.8■□□□□ 0.6
Msx1P13297 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Msx1P13297 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Gm10493-201ENSMUST00000097270 612 ntBASIC18.8■□□□□ 0.6
Msx1P13297 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.8■□□□□ 0.6
Msx1P13297 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Msx1P13297 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Msx1P13297 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Msx1P13297 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Msx1P13297 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Msx1P13297 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
Msx1P13297 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Msx1P13297 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.79■□□□□ 0.6
Msx1P13297 Gm26833-201ENSMUST00000180899 440 ntBASIC18.79■□□□□ 0.6
Msx1P13297 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Msx1P13297 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Msx1P13297 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msx1P13297 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC18.78■□□□□ 0.6
Msx1P13297 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.78■□□□□ 0.6
Msx1P13297 Gm26571-201ENSMUST00000181399 666 ntBASIC18.78■□□□□ 0.6
Msx1P13297 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC18.78■□□□□ 0.6
Msx1P13297 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msx1P13297 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msx1P13297 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msx1P13297 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Msx1P13297 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Msx1P13297 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Msx1P13297 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Msx1P13297 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msx1P13297 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msx1P13297 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Msx1P13297 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.77■□□□□ 0.6
Msx1P13297 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms