Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Gm43530-201ENSMUST00000195920 274 ntBASIC21.58■■□□□ 1.05
Chmp6P0C0A3 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Gm34220-201ENSMUST00000223001 2709 ntBASIC21.58■■□□□ 1.05
Chmp6P0C0A3 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Chmp6P0C0A3 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Chmp6P0C0A3 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.57■■□□□ 1.04
Chmp6P0C0A3 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Chmp6P0C0A3 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Chmp6P0C0A3 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Chmp6P0C0A3 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Chmp6P0C0A3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
Chmp6P0C0A3 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
Chmp6P0C0A3 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Gm8770-201ENSMUST00000121113 1109 ntBASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chmp6P0C0A3 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Chmp6P0C0A3 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chmp6P0C0A3 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Chmp6P0C0A3 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chmp6P0C0A3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Chmp6P0C0A3 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms