Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdha4O88689 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
Pcdha4O88689 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdha4O88689 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC22.33■■□□□ 1.17
Pcdha4O88689 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdha4O88689 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Pcdha4O88689 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Pcdha4O88689 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC22.33■■□□□ 1.16
Pcdha4O88689 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Pcdha4O88689 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC22.33■■□□□ 1.16
Pcdha4O88689 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Pcdha4O88689 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Pcdha4O88689 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC22.32■■□□□ 1.16
Pcdha4O88689 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Pcdha4O88689 Gm6139-201ENSMUST00000079261 882 ntBASIC22.32■■□□□ 1.16
Pcdha4O88689 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Pcdha4O88689 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Pcdha4O88689 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Wdr70-203ENSMUST00000227371 1130 ntBASIC22.31■■□□□ 1.16
Pcdha4O88689 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Pcdha4O88689 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
Pcdha4O88689 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Gm8493-201ENSMUST00000196881 489 ntBASIC22.3■■□□□ 1.16
Pcdha4O88689 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC22.3■■□□□ 1.16
Pcdha4O88689 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Pcdha4O88689 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdha4O88689 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Pcdha4O88689 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdha4O88689 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdha4O88689 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC22.29■■□□□ 1.16
Pcdha4O88689 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC22.29■■□□□ 1.16
Pcdha4O88689 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Pcdha4O88689 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC22.28■■□□□ 1.16
Pcdha4O88689 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC22.28■■□□□ 1.16
Pcdha4O88689 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC22.28■■□□□ 1.16
Pcdha4O88689 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Pcdha4O88689 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
Pcdha4O88689 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC22.27■■□□□ 1.16
Pcdha4O88689 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC22.27■■□□□ 1.16
Pcdha4O88689 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC22.27■■□□□ 1.16
Pcdha4O88689 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC22.27■■□□□ 1.16
Pcdha4O88689 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC22.27■■□□□ 1.16
Pcdha4O88689 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
Pcdha4O88689 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Pcdha4O88689 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
Pcdha4O88689 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
Pcdha4O88689 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Pcdha4O88689 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Pcdha4O88689 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Pcdha4O88689 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC22.25■■□□□ 1.15
Pcdha4O88689 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Flvcr1-202ENSMUST00000191946 1216 ntBASIC22.25■■□□□ 1.15
Pcdha4O88689 Gm43173-201ENSMUST00000202246 593 ntBASIC22.25■■□□□ 1.15
Pcdha4O88689 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC22.25■■□□□ 1.15
Pcdha4O88689 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC22.25■■□□□ 1.15
Pcdha4O88689 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC22.25■■□□□ 1.15
Pcdha4O88689 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Pcdha4O88689 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
Pcdha4O88689 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC22.24■■□□□ 1.15
Pcdha4O88689 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC22.24■■□□□ 1.15
Pcdha4O88689 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdha4O88689 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
Pcdha4O88689 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Pcdha4O88689 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.15
Pcdha4O88689 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdha4O88689 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC22.23■■□□□ 1.15
Pcdha4O88689 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC22.23■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms