Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Gm9959-201ENSMUST00000068277 390 ntBASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Trav1A0A075B5Z4 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav1A0A075B5Z4 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav1A0A075B5Z4 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav1A0A075B5Z4 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav1A0A075B5Z4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trav1A0A075B5Z4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
Trav1A0A075B5Z4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.58■□□□□ 0.56
Trav1A0A075B5Z4 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Trav1A0A075B5Z4 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav1A0A075B5Z4 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav1A0A075B5Z4 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Gm22238-201ENSMUST00000175222 88 ntBASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav1A0A075B5Z4 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.55■□□□□ 0.56
Trav1A0A075B5Z4 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav1A0A075B5Z4 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav1A0A075B5Z4 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav1A0A075B5Z4 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav1A0A075B5Z4 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav1A0A075B5Z4 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav1A0A075B5Z4 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav1A0A075B5Z4 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 AC093043.1-201ENSMUST00000226700 898 ntBASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Trav1A0A075B5Z4 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Trav1A0A075B5Z4 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.52■□□□□ 0.55
Trav1A0A075B5Z4 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav1A0A075B5Z4 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav1A0A075B5Z4 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav1A0A075B5Z4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms