Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Gm37580-201ENSMUST00000192408 2800 ntBASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Gm4865-201ENSMUST00000196284 1309 ntBASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Gm42941-201ENSMUST00000200347 1321 ntBASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Gdf2-201ENSMUST00000100720 2988 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Gemin8-202ENSMUST00000087169 1928 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Slc9a8-202ENSMUST00000073873 4429 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Mybpc3-203ENSMUST00000169776 4163 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Sh3rf2Q8BZT2 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Rasgrp1-204ENSMUST00000173252 1750 ntTSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Tstd2-201ENSMUST00000107770 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm38111-201ENSMUST00000194817 2741 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Olfr55-202ENSMUST00000214888 4675 ntTSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Lgals9-203ENSMUST00000108269 1586 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Snora68-201ENSMUST00000104375 131 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm17151-201ENSMUST00000105760 367 ntTSL 3 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Il15ra-203ENSMUST00000114831 882 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Myl1-203ENSMUST00000120415 621 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm23582-201ENSMUST00000158530 139 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm4705-201ENSMUST00000177415 354 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 C430039J16Rik-201ENSMUST00000181148 658 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Mir6359-201ENSMUST00000183668 81 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm27444-201ENSMUST00000184157 137 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 1700012J22Rik-201ENSMUST00000193492 830 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm42617-201ENSMUST00000197640 1229 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm44304-201ENSMUST00000200509 145 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm5311-201ENSMUST00000203518 709 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm35611-201ENSMUST00000205323 799 ntTSL 3 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Eif3k-204ENSMUST00000208616 909 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm4930-201ENSMUST00000219926 1087 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm26861-207ENSMUST00000223253 1095 ntTSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm36862-204ENSMUST00000223365 642 ntTSL 3 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm8894-201ENSMUST00000074642 666 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Ifnl3-201ENSMUST00000078364 582 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm4763-201ENSMUST00000081657 882 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Rps8-ps4-201ENSMUST00000092523 612 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 AC154640.1-203ENSMUST00000228316 1618 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Zfp872-202ENSMUST00000178901 2958 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Crot-201ENSMUST00000003720 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gm10537-201ENSMUST00000192625 1698 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Gfm2-202ENSMUST00000042084 3074 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 AC154197.1-201ENSMUST00000225136 1382 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 AC124577.2-201ENSMUST00000217413 2420 ntBASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Rad51ap2-201ENSMUST00000124065 3175 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Kpna7-202ENSMUST00000110673 2453 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Eif4e1b-201ENSMUST00000110003 2131 ntAPPRIS P3 TSL 2 BASIC10.75□□□□□ -0.69
Sh3rf2Q8BZT2 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Ptp4a3-203ENSMUST00000165541 3539 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 4933409D19Rik-201ENSMUST00000193674 1557 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Scmh1-203ENSMUST00000106298 1995 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm45663-201ENSMUST00000210429 1632 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm46355-201ENSMUST00000221434 1671 ntTSL 5 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm15651-201ENSMUST00000159953 2507 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Dnaja1-201ENSMUST00000030118 3376 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Rab29-202ENSMUST00000112386 1202 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm15554-201ENSMUST00000120406 913 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 1700112K13Rik-201ENSMUST00000141892 701 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm24078-201ENSMUST00000158184 103 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm17796-201ENSMUST00000189015 1213 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm28893-201ENSMUST00000190951 1108 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm8625-201ENSMUST00000194185 1077 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm37944-201ENSMUST00000194233 414 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm42493-201ENSMUST00000197559 1121 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm43752-201ENSMUST00000198475 697 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm9515-201ENSMUST00000200276 647 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm18123-201ENSMUST00000210874 822 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Gm18122-201ENSMUST00000211390 904 ntBASIC10.74□□□□□ -0.69
Sh3rf2Q8BZT2 Btg4-203ENSMUST00000213680 1282 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms