Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm11544-201ENSMUST00000120215 382 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm16397-201ENSMUST00000122201 494 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm23647-201ENSMUST00000175042 109 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Rn5s-201ENSMUST00000177555 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s108-201ENSMUST00000177575 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s121-201ENSMUST00000177589 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s146-201ENSMUST00000177889 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm22109-201ENSMUST00000177995 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm22291-201ENSMUST00000178027 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s141-201ENSMUST00000178066 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm23284-201ENSMUST00000178069 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s100-201ENSMUST00000178106 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s130-201ENSMUST00000178128 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s111-201ENSMUST00000178203 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s105-201ENSMUST00000178499 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s149-201ENSMUST00000178520 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm24312-201ENSMUST00000178677 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s103-201ENSMUST00000178755 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s123-201ENSMUST00000178804 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s142-201ENSMUST00000178820 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s144-201ENSMUST00000178859 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s139-201ENSMUST00000178975 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s134-201ENSMUST00000178983 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s106-201ENSMUST00000179060 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s136-201ENSMUST00000179080 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm25018-201ENSMUST00000179081 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s104-201ENSMUST00000179107 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s113-201ENSMUST00000179143 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s133-201ENSMUST00000179275 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s117-201ENSMUST00000179431 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm25212-201ENSMUST00000179432 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s138-201ENSMUST00000179476 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s122-201ENSMUST00000179500 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s143-201ENSMUST00000179542 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s107-201ENSMUST00000179704 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm26391-201ENSMUST00000179843 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s118-201ENSMUST00000179887 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s110-201ENSMUST00000179995 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s128-201ENSMUST00000180096 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 n-R5s124-201ENSMUST00000180334 119 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm3433-201ENSMUST00000210149 1058 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm45310-201ENSMUST00000210436 275 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 AC154184.3-201ENSMUST00000225620 1090 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm24089-201ENSMUST00000093696 109 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 2310016G11Rik-201ENSMUST00000094460 992 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Ogfod1-202ENSMUST00000093301 5141 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Cyp2b10-202ENSMUST00000072438 1916 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gpr39-201ENSMUST00000027581 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gm12799-201ENSMUST00000118151 2560 ntBASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Qrfpr-201ENSMUST00000091227 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Golm1-201ENSMUST00000022039 3954 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Med17-201ENSMUST00000034411 3964 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Dgkh-201ENSMUST00000074729 3967 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Phf8-202ENSMUST00000046962 3105 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Kalrn-202ENSMUST00000089655 6506 ntTSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Rtn4ip1-202ENSMUST00000105492 2059 ntTSL 3 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 AI854703-202ENSMUST00000154570 3806 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Pax6-206ENSMUST00000111086 2601 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Fam234a-202ENSMUST00000118487 2629 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Olfr463-203ENSMUST00000217095 1977 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Bzw2-201ENSMUST00000020856 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Upf3bQ3ULL6 Gimap8-202ENSMUST00000203083 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Avil-201ENSMUST00000026500 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Nup50-201ENSMUST00000165443 4741 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Olfr370-203ENSMUST00000214156 2475 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Gm15784-201ENSMUST00000120260 1462 ntBASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Dhx34-204ENSMUST00000121123 3880 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Acsl1-201ENSMUST00000034046 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Ocstamp-201ENSMUST00000029213 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Arhgap4-202ENSMUST00000114404 2895 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Bckdk-207ENSMUST00000206745 1702 ntTSL 5 BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Gm37242-201ENSMUST00000191873 2085 ntBASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Upf3bQ3ULL6 Gm12426-201ENSMUST00000153083 371 ntTSL 5 BASIC11.33□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 95.8 ms