Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Mymk-201ENSMUST00000009358 1382 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Galntl5-202ENSMUST00000114965 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Gm7701-201ENSMUST00000163185 1479 ntBASIC10.09□□□□□ -0.79
Cdx2P43241 CN725425-201ENSMUST00000109284 1929 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
Cdx2P43241 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC10.09□□□□□ -0.79
Cdx2P43241 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC10.09□□□□□ -0.79
Cdx2P43241 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
Cdx2P43241 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Prl8a1-202ENSMUST00000095926 1682 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
Cdx2P43241 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm5174-201ENSMUST00000171131 1423 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Grin1-208ENSMUST00000114318 3920 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Elf2-213ENSMUST00000195432 2161 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Cc2d1a-201ENSMUST00000040383 3471 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Rsad1-201ENSMUST00000040487 4143 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Psd2-203ENSMUST00000175734 4300 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Ccin-201ENSMUST00000095107 1941 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Cdx2P43241 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Plac9b-201ENSMUST00000100809 388 ntTSL 2 BASIC10.08□□□□□ -0.8
Cdx2P43241 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm15476-201ENSMUST00000118247 1191 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Olfr1060-ps1-201ENSMUST00000118335 943 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm12377-201ENSMUST00000118656 252 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm16480-201ENSMUST00000120439 832 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm11701-201ENSMUST00000121277 1142 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm13792-201ENSMUST00000121350 423 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Aif1l-207ENSMUST00000148056 670 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm23999-201ENSMUST00000158057 104 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 4930505M18Rik-201ENSMUST00000175854 1288 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm37872-201ENSMUST00000192362 886 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm8625-201ENSMUST00000194185 1077 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm37362-201ENSMUST00000194567 634 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm33969-201ENSMUST00000197615 388 ntTSL 3 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm5865-201ENSMUST00000198713 637 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 1700048F04Rik-201ENSMUST00000199057 1064 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 6720482G16Rik-201ENSMUST00000199552 1192 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Gm19566-201ENSMUST00000199576 610 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Acsm5-204ENSMUST00000207387 1130 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Tpd52l1-204ENSMUST00000214644 1103 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 AC140409.3-201ENSMUST00000215601 358 ntTSL 3 BASIC10.08□□□□□ -0.8
Cdx2P43241 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Olfr464-205ENSMUST00000217112 2232 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Bcl11a-203ENSMUST00000109516 2329 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Filip1l-202ENSMUST00000159414 3253 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Pfkfb3-215ENSMUST00000183869 1478 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
Cdx2P43241 Slc25a17-201ENSMUST00000023040 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Gcsam-202ENSMUST00000161347 1796 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm3372-201ENSMUST00000198806 1792 ntBASIC10.08□□□□□ -0.8
Cdx2P43241 Olfr707-204ENSMUST00000213251 1777 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Mir9-3hg-202ENSMUST00000181511 3412 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Ppp2r1b-201ENSMUST00000034560 3647 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Polr3c-201ENSMUST00000029741 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx2P43241 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC10.08□□□□□ -0.8
Cdx2P43241 Gm43625-201ENSMUST00000199177 1539 ntBASIC10.07□□□□□ -0.8
Cdx2P43241 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx2P43241 Olfr582-203ENSMUST00000211036 1849 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Cdx2P43241 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx2P43241 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx2P43241 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC10.07□□□□□ -0.8
Cdx2P43241 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx2P43241 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx2P43241 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx2P43241 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx2P43241 Hyal2-206ENSMUST00000195681 2968 ntBASIC10.07□□□□□ -0.8
Cdx2P43241 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC10.07□□□□□ -0.8
Cdx2P43241 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx2P43241 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx2P43241 Stxbp4-203ENSMUST00000107875 1660 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms