Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gbp3-201ENSMUST00000029935 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm15620-201ENSMUST00000122949 270 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm16341-201ENSMUST00000126385 377 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm15569-201ENSMUST00000133675 594 ntTSL 3 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm15412-201ENSMUST00000137193 1096 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm16167-201ENSMUST00000160428 1065 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm9507-202ENSMUST00000180157 654 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm45856-201ENSMUST00000212752 416 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 CT025602.2-201ENSMUST00000226553 772 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm26670-202ENSMUST00000226862 340 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm4846-201ENSMUST00000143922 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Anks1b-216ENSMUST00000182430 3305 ntTSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 1500002C15Rik-201ENSMUST00000178987 2183 ntBASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Camk2b-210ENSMUST00000109815 3780 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Thsd4-201ENSMUST00000034829 4816 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Csgalnact1-201ENSMUST00000078350 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Tuft1-204ENSMUST00000196733 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Olfr223-202ENSMUST00000215626 1695 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Specc1-208ENSMUST00000201624 2518 ntTSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Akap3-201ENSMUST00000095440 3153 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Cdca2-207ENSMUST00000163100 3841 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Ccdc167-203ENSMUST00000129091 2256 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Ppp6r2-201ENSMUST00000088788 2887 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Smc1aQ9CU62 Ptpre-205ENSMUST00000210833 2209 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm26690-201ENSMUST00000181457 1997 ntTSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm30648-202ENSMUST00000200648 1957 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Lrrc49-204ENSMUST00000114034 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Dusp16-202ENSMUST00000129433 3993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Vwa7-202ENSMUST00000172499 3970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gne-201ENSMUST00000030201 5384 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Aebp1-202ENSMUST00000109829 2541 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Ppp1r3c-201ENSMUST00000087321 2719 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Rnh1-201ENSMUST00000106033 2091 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm12712-201ENSMUST00000120676 801 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm11502-201ENSMUST00000120917 1211 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm12453-201ENSMUST00000121981 331 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm9916-201ENSMUST00000192943 1228 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm42430-201ENSMUST00000197209 616 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm42660-201ENSMUST00000197733 947 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 BC106175-202ENSMUST00000219344 1213 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Ctcfl-201ENSMUST00000094287 3217 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Bcl2-202ENSMUST00000189999 2841 ntBASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Arhgap33-204ENSMUST00000207860 4396 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Fgf1-202ENSMUST00000115582 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Specc1l-204ENSMUST00000218766 4725 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 March10-204ENSMUST00000138977 2979 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Uaca-202ENSMUST00000214354 4417 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gpr149-201ENSMUST00000058535 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Tor4a-201ENSMUST00000081869 3255 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Exoc3l4-210ENSMUST00000223050 3418 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Cdh1-203ENSMUST00000167688 3203 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Zfp775-203ENSMUST00000204095 4143 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Fam161a-201ENSMUST00000058269 1927 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Ptk2b-203ENSMUST00000111121 3365 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Hmbox1-201ENSMUST00000022544 3396 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Smc1aQ9CU62 Gm42450-201ENSMUST00000199286 2644 ntTSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Nhsl1-202ENSMUST00000100054 6795 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Asap1-202ENSMUST00000110114 4409 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Ticam1-201ENSMUST00000058136 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 AC140462.2-201ENSMUST00000225718 2433 ntBASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Arfgef3-201ENSMUST00000019999 5606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Sh3d21-201ENSMUST00000094760 1859 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Man2c1-211ENSMUST00000160147 3820 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Mybpc3-201ENSMUST00000111430 4154 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Myo9a-203ENSMUST00000128341 11985 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Rpgr-202ENSMUST00000072393 2380 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Gpsm1-201ENSMUST00000066889 3432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Elf2-206ENSMUST00000163748 2656 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Prph2-201ENSMUST00000024773 2665 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Smc1aQ9CU62 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms