Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC10.15□□□□□ -0.79
Cdx2P43241 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Gm16677-201ENSMUST00000181229 2174 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Gm27174-201ENSMUST00000184493 2174 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Gm38048-201ENSMUST00000193778 2174 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC10.15□□□□□ -0.79
Cdx2P43241 Eddm3b-201ENSMUST00000100645 1412 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
Cdx2P43241 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Limch1-201ENSMUST00000038188 5903 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Asns-202ENSMUST00000115542 2016 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm15599-201ENSMUST00000122283 1345 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Bckdk-207ENSMUST00000206745 1702 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Cdx2P43241 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm24470-201ENSMUST00000104486 132 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Lyrm1-204ENSMUST00000106518 875 ntAPPRIS P1 TSL 3 BASIC10.14□□□□□ -0.79
Cdx2P43241 Cav2-203ENSMUST00000115462 694 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Pex13-ps-201ENSMUST00000118184 1157 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Rptoros-201ENSMUST00000127450 1174 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm16226-204ENSMUST00000162639 423 ntTSL 3 BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm4868-201ENSMUST00000164138 789 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Gm5501-201ENSMUST00000165917 832 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Glmp-207ENSMUST00000176425 960 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm26532-201ENSMUST00000180630 690 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Gm28179-201ENSMUST00000188365 613 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Gm28079-206ENSMUST00000188554 1170 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm29669-201ENSMUST00000188605 881 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm29157-201ENSMUST00000188753 612 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 9230114K14Rik-202ENSMUST00000198720 837 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC10.14□□□□□ -0.79
Cdx2P43241 Gm40332-201ENSMUST00000199847 938 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Ighv1-86-201ENSMUST00000200562 353 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 0610033M10Rik-202ENSMUST00000205236 1102 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Tmem238l-203ENSMUST00000211300 930 ntAPPRIS P1 TSL 3 BASIC10.14□□□□□ -0.79
Cdx2P43241 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Tmsb15b2-201ENSMUST00000069803 450 ntTSL 2 BASIC10.14□□□□□ -0.79
Cdx2P43241 Olfr1219-201ENSMUST00000099797 936 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
Cdx2P43241 Epha7-204ENSMUST00000108194 2323 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Pde2a-201ENSMUST00000163751 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Rack1-201ENSMUST00000020640 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 9530059O14Rik-204ENSMUST00000215759 1606 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 AC211878.3-201ENSMUST00000222629 2018 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 AC124577.2-201ENSMUST00000217413 2420 ntBASIC10.14□□□□□ -0.79
Cdx2P43241 Mob4-205ENSMUST00000162364 2840 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Dhdds-209ENSMUST00000144668 3219 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Dnaja1-201ENSMUST00000030118 3376 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Palm2-201ENSMUST00000102904 2958 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Kyat1-203ENSMUST00000113660 1388 ntTSL 5 BASIC10.14□□□□□ -0.79
Cdx2P43241 Ctss-201ENSMUST00000015667 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
Cdx2P43241 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Picalm-201ENSMUST00000049537 3528 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Slc38a4-202ENSMUST00000166223 1908 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm26586-201ENSMUST00000181918 1745 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 AC122860.2-201ENSMUST00000217967 2671 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Arhgef3-204ENSMUST00000225949 3198 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Ptbp3-201ENSMUST00000030076 6855 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Sema5b-201ENSMUST00000050625 4350 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm9-201ENSMUST00000101636 817 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm15132-201ENSMUST00000118581 652 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Gm14650-201ENSMUST00000120400 889 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Gm12326-201ENSMUST00000132986 618 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm15472-201ENSMUST00000141652 847 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm11655-201ENSMUST00000153899 765 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm14341-201ENSMUST00000154616 667 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx2P43241 Rian-210ENSMUST00000182689 295 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx2P43241 Gm29487-201ENSMUST00000190146 256 ntBASIC10.13□□□□□ -0.79
Cdx2P43241 Gm4430-202ENSMUST00000193902 1041 ntBASIC10.13□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 63.2 ms