Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm16459-201ENSMUST00000121443 686 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Gm11354-201ENSMUST00000121974 422 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Gm22344-201ENSMUST00000122642 278 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Gm25545-201ENSMUST00000122673 323 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Gm16441-201ENSMUST00000138176 924 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Gm12744-201ENSMUST00000146976 519 ntTSL 3 BASIC12.4□□□□□ -0.42
Traf1P39428 Gm6038-201ENSMUST00000154310 948 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Park2-203ENSMUST00000168593 735 ntTSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Gm26906-201ENSMUST00000180523 1228 ntTSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Gm42710-201ENSMUST00000200608 985 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC12.4□□□□□ -0.42
Traf1P39428 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC12.4□□□□□ -0.42
Traf1P39428 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Olfr456-201ENSMUST00000057251 1052 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Traf1P39428 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Tbp-203ENSMUST00000118001 1652 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Gm37160-201ENSMUST00000193081 1689 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Pced1a-201ENSMUST00000089581 3496 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Gm38271-201ENSMUST00000192296 1603 ntBASIC12.4□□□□□ -0.42
Traf1P39428 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Traf1P39428 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Traf1P39428 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Traf1P39428 Cdc20b-204ENSMUST00000181568 1494 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
Traf1P39428 Akap3-202ENSMUST00000202574 2879 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
Traf1P39428 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.43
Traf1P39428 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Traf1P39428 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Traf1P39428 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 Bloc1s5-201ENSMUST00000035899 5634 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Sod3-201ENSMUST00000101208 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 4833411C07Rik-202ENSMUST00000207914 1568 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Tnfaip8l3-201ENSMUST00000098760 4403 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Riok3-201ENSMUST00000025270 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 AC154171.2-201ENSMUST00000225219 2652 ntBASIC12.39□□□□□ -0.43
Traf1P39428 Olfr1113-202ENSMUST00000215611 1949 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 Gm12159-201ENSMUST00000143869 1447 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Nrg1-213ENSMUST00000208617 2787 ntTSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC12.39□□□□□ -0.43
Traf1P39428 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 4930412O13Rik-202ENSMUST00000114919 558 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
Traf1P39428 Gm12028-201ENSMUST00000118065 436 ntBASIC12.39□□□□□ -0.43
Traf1P39428 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Gm7539-201ENSMUST00000189789 630 ntBASIC12.39□□□□□ -0.43
Traf1P39428 1700020A23Rik-203ENSMUST00000189961 541 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 Gm6606-201ENSMUST00000193613 947 ntBASIC12.39□□□□□ -0.43
Traf1P39428 Tmprss11c-202ENSMUST00000196462 1257 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 AC154461.3-201ENSMUST00000224831 573 ntBASIC12.39□□□□□ -0.43
Traf1P39428 AC156790.2-201ENSMUST00000227115 568 ntBASIC12.39□□□□□ -0.43
Traf1P39428 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Nat8f6-201ENSMUST00000087656 925 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Atf7-201ENSMUST00000096143 390 ntBASIC12.39□□□□□ -0.43
Traf1P39428 Nanog-201ENSMUST00000012540 2211 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Itga11-201ENSMUST00000034774 4969 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Traf1P39428 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Traf1P39428 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Stk17b-201ENSMUST00000027263 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 H2-T3-201ENSMUST00000025312 2114 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 1500012K07Rik-201ENSMUST00000181846 2345 ntTSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Gm26908-201ENSMUST00000181856 1637 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 AC151836.1-201ENSMUST00000228730 1637 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 Wdr46-ps-201ENSMUST00000200591 1712 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Mobp-202ENSMUST00000093773 3286 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Gm16518-201ENSMUST00000117960 508 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Tcl1-203ENSMUST00000175652 535 ntTSL 2 BASIC12.38□□□□□ -0.43
Traf1P39428 Gm8601-201ENSMUST00000182096 909 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Gm7985-201ENSMUST00000183329 981 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Traf1P39428 Gm45135-201ENSMUST00000206787 1184 ntBASIC12.38□□□□□ -0.43
Traf1P39428 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
Traf1P39428 Gm7192-201ENSMUST00000210793 1137 ntBASIC12.38□□□□□ -0.43
Traf1P39428 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC12.38□□□□□ -0.43
Traf1P39428 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms