Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm19557-201ENSMUST00000182109 2765 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm42047-202ENSMUST00000212899 4988 ntTSL 2 BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Pklr-202ENSMUST00000107482 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Kirrel3-201ENSMUST00000045091 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Casq2-205ENSMUST00000165540 2434 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm12381-201ENSMUST00000126314 2186 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Lingo1-206ENSMUST00000210032 3627 ntTSL 5 BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm26673-201ENSMUST00000181126 3377 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.7□□□□□ -0.38
Rfx1P48377 Pgbd5-206ENSMUST00000172566 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Gk2-201ENSMUST00000059657 1880 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
Rfx1P48377 Prmt7-201ENSMUST00000071592 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Bpifb9b-201ENSMUST00000088921 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Adamtsl4-201ENSMUST00000015994 3856 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Avil-203ENSMUST00000129173 2925 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Limk1-202ENSMUST00000111233 3109 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Rad18-204ENSMUST00000113182 2220 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Cx3cl1-201ENSMUST00000034230 3315 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Clcn1-201ENSMUST00000031894 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Fcgbp-203ENSMUST00000138392 7926 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Fcgbp-201ENSMUST00000076648 7928 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm42587-201ENSMUST00000198462 1981 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Gm37003-201ENSMUST00000194702 2827 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm12165-201ENSMUST00000117047 342 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Gm11949-201ENSMUST00000117640 372 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC12.69□□□□□ -0.38
Rfx1P48377 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm25025-201ENSMUST00000175018 111 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC12.69□□□□□ -0.38
Rfx1P48377 Scgb2b27-203ENSMUST00000185399 702 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm6677-201ENSMUST00000195100 441 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Gm42423-201ENSMUST00000196396 670 ntTSL 3 BASIC12.69□□□□□ -0.38
Rfx1P48377 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 9530062K07Rik-201ENSMUST00000203332 787 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 AC122408.1-201ENSMUST00000218949 218 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 AC154290.1-201ENSMUST00000223786 1240 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 AC159196.1-201ENSMUST00000225524 377 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Bzw2-201ENSMUST00000020856 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Rassf2-201ENSMUST00000028814 8233 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm6092-201ENSMUST00000121659 2029 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Mmp19-203ENSMUST00000219404 2236 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Invs-201ENSMUST00000030029 5633 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Trim9-211ENSMUST00000223160 3574 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Rfx1P48377 Klhl22-202ENSMUST00000120488 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Gm6170-201ENSMUST00000187672 1388 ntBASIC12.69□□□□□ -0.38
Rfx1P48377 Myo18a-223ENSMUST00000169105 6475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Rfx1P48377 Esrp2-201ENSMUST00000115979 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Btbd7-206ENSMUST00000223554 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 5330439K02Rik-201ENSMUST00000180953 2312 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Fndc7-202ENSMUST00000102620 3477 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Mir9-3hg-202ENSMUST00000181511 3412 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Tmem255a-201ENSMUST00000066498 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Sun1-205ENSMUST00000110883 3714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Dido1-205ENSMUST00000103056 4281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Lrrc28-202ENSMUST00000053950 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Rfx1P48377 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm12389-201ENSMUST00000117696 418 ntBASIC12.68□□□□□ -0.38
Rfx1P48377 Gm12702-201ENSMUST00000123258 612 ntTSL 3 BASIC12.68□□□□□ -0.38
Rfx1P48377 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm17019-201ENSMUST00000167908 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Gm17058-201ENSMUST00000168951 928 ntTSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 4833421G17Rik-201ENSMUST00000191704 844 ntBASIC12.68□□□□□ -0.38
Rfx1P48377 Gm25580-201ENSMUST00000083409 327 ntBASIC12.68□□□□□ -0.38
Rfx1P48377 Bcorl1-203ENSMUST00000136348 7446 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Rfx1P48377 Ggct-202ENSMUST00000131475 3960 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Rfx1P48377 Calr4-201ENSMUST00000030285 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 106.2 ms