Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Cdx2P43241 Capn5-201ENSMUST00000040971 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Cdx2P43241 Gm37542-201ENSMUST00000192563 2832 ntBASIC10.17□□□□□ -0.78
Cdx2P43241 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Cdx2P43241 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC10.17□□□□□ -0.78
Cdx2P43241 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Cdx2P43241 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC10.17□□□□□ -0.78
Cdx2P43241 Stx7-205ENSMUST00000220041 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Nsd3-206ENSMUST00000142395 10105 ntAPPRIS P2 TSL 5 BASIC10.17□□□□□ -0.78
Cdx2P43241 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 A830018L16Rik-209ENSMUST00000179089 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Cdx2P43241 Ptpro-201ENSMUST00000077115 5049 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
Cdx2P43241 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Tcn2-207ENSMUST00000109993 2027 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Itsn2-211ENSMUST00000219007 4977 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Mak16-201ENSMUST00000033983 1902 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Spaca9-201ENSMUST00000102877 671 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Stmn3-201ENSMUST00000103045 1136 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Gm15626-201ENSMUST00000117478 868 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 Platr12-201ENSMUST00000141027 462 ntTSL 3 BASIC10.16□□□□□ -0.78
Cdx2P43241 Gm23432-201ENSMUST00000157181 131 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 Rps18-206ENSMUST00000174609 527 ntTSL 2 BASIC10.16□□□□□ -0.78
Cdx2P43241 Pik3r4-206ENSMUST00000188784 1295 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Gm5190-201ENSMUST00000192434 357 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 Gm5543-201ENSMUST00000193329 1091 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 Gm6439-201ENSMUST00000199849 862 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 Gm29328-212ENSMUST00000209182 1168 ntTSL 5 BASIC10.16□□□□□ -0.78
Cdx2P43241 Gm19090-201ENSMUST00000218187 774 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 2010109A12Rik-201ENSMUST00000031330 549 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Mrps14-202ENSMUST00000097193 787 ntTSL 2 BASIC10.16□□□□□ -0.78
Cdx2P43241 Gm5148-202ENSMUST00000099128 1098 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC10.16□□□□□ -0.78
Cdx2P43241 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Cdx2P43241 Golga2-202ENSMUST00000100194 4373 ntAPPRIS P4 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC10.16□□□□□ -0.78
Cdx2P43241 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC10.16□□□□□ -0.78
Cdx2P43241 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 AC126257.2-201ENSMUST00000215507 2300 ntBASIC10.16□□□□□ -0.78
Cdx2P43241 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Cdx2P43241 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC10.15□□□□□ -0.78
Cdx2P43241 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
Cdx2P43241 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 AC149588.2-201ENSMUST00000228182 1859 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Babam2-202ENSMUST00000071531 1308 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Gsdma3-202ENSMUST00000107508 1587 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Cdx2P43241 Ccr6-202ENSMUST00000164411 1553 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Cdx2P43241 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Cdx2P43241 Camk2g-202ENSMUST00000080440 3604 ntAPPRIS P4 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 A930016O22Rik-202ENSMUST00000208685 2349 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Cdx2P43241 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Scgb1b29-201ENSMUST00000108094 282 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Gm8482-201ENSMUST00000117972 471 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm11929-201ENSMUST00000118175 945 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm13841-201ENSMUST00000118829 483 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm11449-201ENSMUST00000119175 476 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm15373-201ENSMUST00000121495 214 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm15489-201ENSMUST00000132811 973 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Gm16263-201ENSMUST00000144680 502 ntTSL 3 BASIC10.15□□□□□ -0.78
Cdx2P43241 Gm22994-201ENSMUST00000175422 82 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm8210-201ENSMUST00000178557 483 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm15454-201ENSMUST00000179718 483 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Mir6396-201ENSMUST00000183603 111 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm28916-201ENSMUST00000186988 699 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm6370-202ENSMUST00000198912 1017 ntAPPRIS ALT2 TSL 3 BASIC10.15□□□□□ -0.78
Cdx2P43241 Gm42588-201ENSMUST00000200538 1297 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 AC130217.1-201ENSMUST00000224146 909 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 AC124581.2-201ENSMUST00000225459 282 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Gm6344-201ENSMUST00000075962 483 ntBASIC10.15□□□□□ -0.78
Cdx2P43241 Fthl17e-201ENSMUST00000096509 841 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
Cdx2P43241 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Cdx2P43241 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 65.4 ms