Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm27953-201ENSMUST00000185171 143 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.72□□□□□ -0.37
Rfx1P48377 Ighv5-11-201ENSMUST00000193354 371 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Fxyd1-214ENSMUST00000206328 545 ntAPPRIS P1 TSL 3 BASIC12.72□□□□□ -0.37
Rfx1P48377 Gm44551-201ENSMUST00000208804 171 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Gm7319-201ENSMUST00000210047 778 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 Gm9257-201ENSMUST00000221254 232 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 AC124581.2-201ENSMUST00000225459 282 ntBASIC12.72□□□□□ -0.37
Rfx1P48377 E330021D16Rik-201ENSMUST00000058713 1116 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Rfx1P48377 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Lig4-201ENSMUST00000095476 5028 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Loxl3-202ENSMUST00000101257 3252 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Il17ra-201ENSMUST00000002976 7752 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Cped1-201ENSMUST00000115382 2002 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Rfx1P48377 Slc6a18-201ENSMUST00000022105 2839 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Pcdh15-229ENSMUST00000155701 2754 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Stau2-216ENSMUST00000162627 2773 ntTSL 5 BASIC12.72□□□□□ -0.37
Rfx1P48377 Kat7-204ENSMUST00000107733 3470 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Rfx1P48377 Stk26-201ENSMUST00000033444 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Pcdhb10-201ENSMUST00000051126 2851 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Rfx1P48377 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Tial1-202ENSMUST00000106226 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm19027-201ENSMUST00000187291 1355 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Smok3a-202ENSMUST00000171498 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm21998-201ENSMUST00000117552 1308 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Trak2-201ENSMUST00000027186 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Slc34a2-201ENSMUST00000094787 4176 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm15808-201ENSMUST00000119046 604 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm25343-201ENSMUST00000157460 107 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Gm23699-201ENSMUST00000158835 135 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm4812-201ENSMUST00000182847 993 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Mir7686-201ENSMUST00000200604 57 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Gm44753-202ENSMUST00000208297 562 ntTSL 5 BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
Rfx1P48377 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC12.71□□□□□ -0.37
Rfx1P48377 Gm19046-201ENSMUST00000221263 1298 ntBASIC12.71□□□□□ -0.37
Rfx1P48377 Tctex1d1-201ENSMUST00000030248 977 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Rfx1P48377 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Mical3-217ENSMUST00000207889 9204 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Rfx1P48377 H2-Eb2-201ENSMUST00000050325 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Osbpl1a-204ENSMUST00000119043 2522 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Ciapin1-209ENSMUST00000162538 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Tyw1-202ENSMUST00000044204 4698 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Cyp7b1-201ENSMUST00000035625 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Rfx1P48377 Gramd1b-202ENSMUST00000118159 2781 ntTSL 5 BASIC12.71□□□□□ -0.38
Rfx1P48377 Igf2bp2-202ENSMUST00000115379 3078 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx1P48377 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC12.71□□□□□ -0.38
Rfx1P48377 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
Rfx1P48377 Tmem131l-203ENSMUST00000192095 4774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx1P48377 Pced1b-204ENSMUST00000228521 1790 ntAPPRIS P1 BASIC12.71□□□□□ -0.38
Rfx1P48377 Dcun1d4-201ENSMUST00000063882 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx1P48377 Tdp1-201ENSMUST00000021594 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx1P48377 C920021L13Rik-201ENSMUST00000120398 1723 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Rfx1P48377 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC12.71□□□□□ -0.38
Rfx1P48377 Umad1-201ENSMUST00000159168 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Arhgef10-202ENSMUST00000110800 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Fgd4-204ENSMUST00000161188 2214 ntTSL 2 BASIC12.7□□□□□ -0.38
Rfx1P48377 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Olfr272-202ENSMUST00000107667 1936 ntAPPRIS P1 TSL 3 BASIC12.7□□□□□ -0.38
Rfx1P48377 Tada2a-201ENSMUST00000018795 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Idua-201ENSMUST00000071650 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Sik2-206ENSMUST00000176824 5369 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Rfx1P48377 Vwa5b1-201ENSMUST00000030533 7486 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Fgfr1-213ENSMUST00000167764 2915 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm42651-201ENSMUST00000199851 1339 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 Nr2c1-201ENSMUST00000092213 2376 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Rfx1P48377 Usp4-209ENSMUST00000194959 3436 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Klhl7-202ENSMUST00000163409 2857 ntTSL 2 BASIC12.7□□□□□ -0.38
Rfx1P48377 Cwc25-202ENSMUST00000107579 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Itgad-202ENSMUST00000106237 4105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Bcat1-203ENSMUST00000111742 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm12663-201ENSMUST00000118481 958 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 Gm13284-201ENSMUST00000121020 547 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm4726-201ENSMUST00000135604 736 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 Gm6019-201ENSMUST00000148369 736 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 Gm5244-201ENSMUST00000164001 339 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC12.7□□□□□ -0.38
Rfx1P48377 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
Rfx1P48377 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Rfx1P48377 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.7□□□□□ -0.38
Rfx1P48377 BC049762-202ENSMUST00000065950 883 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 Cd300c2-201ENSMUST00000092464 1187 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Rfx1P48377 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms