Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pnpla6-201ENSMUST00000004681 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm13817-201ENSMUST00000142249 604 ntTSL 3 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Has2os-202ENSMUST00000163314 633 ntTSL 3 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm5298-201ENSMUST00000201122 892 ntBASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Acy1-211ENSMUST00000216400 1030 ntTSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm8170-201ENSMUST00000218581 945 ntBASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Taar7f-201ENSMUST00000071691 1077 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm7536-201ENSMUST00000077389 444 ntBASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Ddr1-202ENSMUST00000097333 3593 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Dld-201ENSMUST00000110857 2544 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Vipas39-203ENSMUST00000179379 2418 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 4921513H07Rik-201ENSMUST00000201403 2238 ntBASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Phc1-211ENSMUST00000161054 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Add2-204ENSMUST00000203366 3407 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Unkl-202ENSMUST00000039734 4779 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Zeb1-201ENSMUST00000025081 5805 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Camta2-201ENSMUST00000036299 4495 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Upf3bQ3ULL6 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Pnkd-202ENSMUST00000087225 2859 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Snx29-201ENSMUST00000096273 1622 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gtf3c6-206ENSMUST00000217537 2526 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Ybey-201ENSMUST00000049185 4522 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm19327-201ENSMUST00000220651 3271 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Il16-203ENSMUST00000145610 3183 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Skp2-201ENSMUST00000096482 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 C330027C09Rik-202ENSMUST00000117994 3977 ntTSL 5 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm19951-201ENSMUST00000222616 1328 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 C330027C09Rik-201ENSMUST00000048374 3974 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Ighv13-1-201ENSMUST00000103480 294 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Smim11-202ENSMUST00000118064 782 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm14234-201ENSMUST00000119539 845 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm16169-202ENSMUST00000162432 2128 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Csrnp3-208ENSMUST00000176109 2958 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm16894-201ENSMUST00000181756 842 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Nmbr-207ENSMUST00000190751 921 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 2410002F23Rik-220ENSMUST00000191537 872 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm38313-201ENSMUST00000191953 1266 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm37860-201ENSMUST00000195380 1034 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm44155-201ENSMUST00000203923 412 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm18059-201ENSMUST00000208073 580 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm45258-201ENSMUST00000210042 853 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Ormdl2-203ENSMUST00000219215 1051 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 2310039L15Rik-203ENSMUST00000220058 727 ntTSL 5 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm31513-201ENSMUST00000223261 684 ntTSL 2 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Inpp4a-202ENSMUST00000058307 2963 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Vmn1r212-201ENSMUST00000095960 1164 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gria4-202ENSMUST00000063508 5352 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm42521-201ENSMUST00000199190 2040 ntBASIC11.46□□□□□ -0.57
Upf3bQ3ULL6 Gm44617-202ENSMUST00000209122 2763 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Smok3a-201ENSMUST00000085886 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 AC154220.1-201ENSMUST00000225033 1705 ntBASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Upf3bQ3ULL6 1810053B23Rik-205ENSMUST00000188056 1592 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 AC108416.1-201ENSMUST00000228755 1558 ntBASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Dok4-204ENSMUST00000212810 2558 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Gm15983-201ENSMUST00000140000 4814 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Upf3bQ3ULL6 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 91.7 ms