Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cux1P53564 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Cux1P53564 Lztr1-202ENSMUST00000115681 3394 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Abi1-206ENSMUST00000126112 3360 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm13215-201ENSMUST00000117559 472 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Gm12946-201ENSMUST00000122969 519 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm12796-201ENSMUST00000131864 344 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Pou1f1-205ENSMUST00000184525 1020 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Trav9n-1-201ENSMUST00000185224 339 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Gm5259-201ENSMUST00000191231 800 ntBASIC16.21■□□□□ 0.19
Cux1P53564 4930515G16Rik-201ENSMUST00000199440 1256 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Gm43066-201ENSMUST00000199589 1260 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Btg4-202ENSMUST00000213117 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 AC123698.1-201ENSMUST00000227090 402 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Gzmf-201ENSMUST00000022757 919 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Nmb-201ENSMUST00000026817 705 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Krtap21-1-201ENSMUST00000078422 748 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Cux1P53564 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Ssty1-202ENSMUST00000186035 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm21454-202ENSMUST00000192204 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm20807-201ENSMUST00000194687 1336 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Gm15383-201ENSMUST00000121889 1443 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Gm45110-201ENSMUST00000205704 1402 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Gm7701-201ENSMUST00000163185 1479 ntBASIC16.21■□□□□ 0.19
Cux1P53564 Katnal2-211ENSMUST00000154665 1515 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Hmg20a-205ENSMUST00000215269 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC16.21■□□□□ 0.19
Cux1P53564 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Dennd1c-201ENSMUST00000011623 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Cux1P53564 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cux1P53564 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Cux1P53564 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Gm8163-201ENSMUST00000122020 1060 ntBASIC16.2■□□□□ 0.18
Cux1P53564 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Gm13629-201ENSMUST00000141149 1022 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Gm16973-201ENSMUST00000180682 1299 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Gm27168-201ENSMUST00000183394 361 ntTSL 3 BASIC16.2■□□□□ 0.18
Cux1P53564 Gm31763-202ENSMUST00000218205 1724 ntBASIC16.2■□□□□ 0.18
Cux1P53564 AC116797.2-203ENSMUST00000225290 565 ntBASIC16.2■□□□□ 0.18
Cux1P53564 Mettl7b-201ENSMUST00000026398 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Tceal9-201ENSMUST00000048687 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Ctse-201ENSMUST00000073350 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Cyp2d9-201ENSMUST00000089129 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC16.2■□□□□ 0.18
Cux1P53564 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Cux1P53564 Gm2128-201ENSMUST00000108009 2560 ntBASIC16.2■□□□□ 0.18
Cux1P53564 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Cux1P53564 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 AC129336.2-201ENSMUST00000218053 3086 ntBASIC16.2■□□□□ 0.18
Cux1P53564 Gm8806-201ENSMUST00000120076 1407 ntBASIC16.2■□□□□ 0.18
Cux1P53564 Vgll3-202ENSMUST00000227997 1383 ntBASIC16.2■□□□□ 0.18
Cux1P53564 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Cux1P53564 Fhl3-202ENSMUST00000106199 1139 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Cux1P53564 Epp13-201ENSMUST00000121024 957 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Cux1P53564 Gm23479-201ENSMUST00000158876 122 ntBASIC16.19■□□□□ 0.18
Cux1P53564 Gm20467-201ENSMUST00000172872 994 ntTSL 3 BASIC16.19■□□□□ 0.18
Cux1P53564 Gm26698-201ENSMUST00000181290 971 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 A930033M14Rik-201ENSMUST00000217206 400 ntBASIC16.19■□□□□ 0.18
Cux1P53564 AC129590.1-201ENSMUST00000225573 852 ntBASIC16.19■□□□□ 0.18
Cux1P53564 Crip1-201ENSMUST00000006523 445 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Rpl15-ps3-201ENSMUST00000088480 615 ntBASIC16.19■□□□□ 0.18
Cux1P53564 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Rubie-203ENSMUST00000227803 2430 ntBASIC16.19■□□□□ 0.18
Cux1P53564 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Etv3-201ENSMUST00000117293 2151 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Cux1P53564 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Cux1P53564 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC16.19■□□□□ 0.18
Cux1P53564 Cd1d1-201ENSMUST00000029717 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Sept2-201ENSMUST00000027495 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Gm37036-201ENSMUST00000192836 2506 ntBASIC16.19■□□□□ 0.18
Cux1P53564 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Ribc1-201ENSMUST00000026288 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Cux1P53564 Cage1-203ENSMUST00000110233 2875 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 64 ms