Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Gria4-202ENSMUST00000063508 5352 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Mid1-214ENSMUST00000163810 3689 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Smc1aQ9CU62 Dcaf11-206ENSMUST00000128490 2660 ntAPPRIS P2 TSL 2 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Mdm1-203ENSMUST00000164077 2922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 AC129336.1-201ENSMUST00000220224 2277 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Camta2-201ENSMUST00000036299 4495 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Clip1-203ENSMUST00000111561 5883 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Ap5z1-201ENSMUST00000038699 3689 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 B630019A10Rik-201ENSMUST00000149488 2407 ntTSL 2 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm14993-201ENSMUST00000121180 164 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm17192-201ENSMUST00000169031 511 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm18201-201ENSMUST00000174735 875 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm37597-201ENSMUST00000191853 382 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 AC130477.1-201ENSMUST00000226982 420 ntBASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Aspm-201ENSMUST00000053364 9867 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Il17rd-201ENSMUST00000035336 8280 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Dlgap1-214ENSMUST00000155016 4712 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Platr6-201ENSMUST00000180731 1818 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Smc1aQ9CU62 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Zbtb25-202ENSMUST00000176102 2707 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Slc25a12-206ENSMUST00000151937 6351 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Bco1-203ENSMUST00000176860 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Tmem130-201ENSMUST00000061446 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm43143-201ENSMUST00000196083 2023 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Styk1-202ENSMUST00000121078 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Opn1mw-202ENSMUST00000101457 1233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Vsir-202ENSMUST00000105459 1290 ntTSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm6322-201ENSMUST00000118789 1004 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm13445-201ENSMUST00000121664 307 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm22846-201ENSMUST00000157706 270 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm20495-201ENSMUST00000173902 235 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm43912-201ENSMUST00000204352 538 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 C8g-202ENSMUST00000040042 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Actbl2-201ENSMUST00000054716 2737 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Slc5a9-201ENSMUST00000102719 2460 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Hdac9-206ENSMUST00000209990 3072 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 CT010447.1-201ENSMUST00000225657 1608 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 C2cd5-204ENSMUST00000203187 3494 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Zfp940-202ENSMUST00000108223 2560 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Nr1i2-201ENSMUST00000023504 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Mgat5-201ENSMUST00000038361 8436 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Megf10-201ENSMUST00000075770 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 AU041133-202ENSMUST00000201286 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Atad5-201ENSMUST00000017694 7272 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Rnpc3-201ENSMUST00000092154 3888 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Olfr463-202ENSMUST00000215150 2031 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm44573-201ENSMUST00000191753 2370 ntBASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Smc1aQ9CU62 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Zfp956-201ENSMUST00000101445 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Gm21759-201ENSMUST00000178345 1828 ntBASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Prom2-202ENSMUST00000103214 4190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Igsf6-201ENSMUST00000047194 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Pigc-205ENSMUST00000193784 4207 ntAPPRIS P1 BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Peg3-201ENSMUST00000051209 8694 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Mllt3-201ENSMUST00000078090 6069 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Smc1aQ9CU62 Robo4-203ENSMUST00000115048 3392 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms