Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Lrat-201ENSMUST00000029632 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Scn8a-201ENSMUST00000082209 11293 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Schip1-202ENSMUST00000169909 1517 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm19680-201ENSMUST00000095050 1513 ntBASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Spats2l-206ENSMUST00000167085 3929 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Zfp423-203ENSMUST00000165770 4334 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Zfp286-202ENSMUST00000108705 1979 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Pemt-202ENSMUST00000102692 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Mrpl55-205ENSMUST00000108787 718 ntTSL 2 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm13530-201ENSMUST00000134014 390 ntTSL 2 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm37365-201ENSMUST00000193109 409 ntBASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm42430-201ENSMUST00000197209 616 ntBASIC12.53□□□□□ -0.4
Vps53Q8CCB4 AC122024.3-201ENSMUST00000217719 294 ntBASIC12.53□□□□□ -0.4
Vps53Q8CCB4 AI463170-202ENSMUST00000218453 558 ntTSL 2 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm8181-201ENSMUST00000062242 669 ntBASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm10020-201ENSMUST00000081993 612 ntBASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Arvcf-203ENSMUST00000115612 4218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Ces5a-203ENSMUST00000212009 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Nphs1-203ENSMUST00000126297 3877 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Slc25a25-202ENSMUST00000052119 3529 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Camk1g-201ENSMUST00000016323 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Cyp2a22-201ENSMUST00000170227 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Prkcd-201ENSMUST00000022521 2612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Arhgap11a-202ENSMUST00000110947 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Arsb-201ENSMUST00000091403 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Vps53Q8CCB4 Rbm8a-203ENSMUST00000198027 2757 ntTSL 3 BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Ano10-203ENSMUST00000214409 2384 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Rbbp5-202ENSMUST00000187505 1977 ntTSL 5 BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Gm45165-201ENSMUST00000207763 1631 ntBASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Urb1-203ENSMUST00000140920 7344 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Vps53Q8CCB4 Gm22594-201ENSMUST00000104251 130 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm25677-201ENSMUST00000174983 72 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 AU020206-201ENSMUST00000181224 656 ntTSL 2 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm28032-201ENSMUST00000184104 96 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm42433-201ENSMUST00000196806 940 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 1700086D15Rik-201ENSMUST00000020855 1092 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 AC170997.1-201ENSMUST00000214554 1053 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 AC154305.2-201ENSMUST00000225813 901 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Map2-206ENSMUST00000114017 4981 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm42941-201ENSMUST00000200347 1321 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Afap1-201ENSMUST00000064571 6618 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Epb41-204ENSMUST00000105970 5059 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Gm5822-201ENSMUST00000161562 1378 ntBASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Kit-201ENSMUST00000005815 5214 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Dclk2-209ENSMUST00000195561 3486 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Vps53Q8CCB4 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Il1r1-201ENSMUST00000027241 5819 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 4930484H19Rik-201ENSMUST00000218870 1737 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Gm3372-201ENSMUST00000198806 1792 ntBASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Vps53Q8CCB4 Gm43713-201ENSMUST00000198251 1896 ntTSL 5 BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms