Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col1a1P11087 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Col1a1P11087 Gm16499-201ENSMUST00000204648 2065 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Col1a1P11087 Gm7823-201ENSMUST00000120761 1623 ntBASIC12.47□□□□□ -0.41
Col1a1P11087 Gm13372-201ENSMUST00000123129 688 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Faap24-203ENSMUST00000154597 831 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
Col1a1P11087 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Gm26611-201ENSMUST00000181449 785 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Lysmd4-203ENSMUST00000207757 631 ntAPPRIS ALT2 TSL 3 BASIC12.46□□□□□ -0.41
Col1a1P11087 Gm18621-201ENSMUST00000222677 679 ntBASIC12.46□□□□□ -0.41
Col1a1P11087 AC242269.1-201ENSMUST00000227020 741 ntBASIC12.46□□□□□ -0.41
Col1a1P11087 AC161581.1-201ENSMUST00000228696 318 ntBASIC12.46□□□□□ -0.41
Col1a1P11087 4931423N10Rik-201ENSMUST00000028113 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Myc-208ENSMUST00000191178 1362 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Slc17a5-202ENSMUST00000117645 3114 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Elmo2-201ENSMUST00000071699 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Pfkfb3-215ENSMUST00000183869 1478 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Gm4925-202ENSMUST00000168843 1561 ntBASIC12.46□□□□□ -0.41
Col1a1P11087 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Smpd4-218ENSMUST00000170273 2166 ntTSL 5 BASIC12.46□□□□□ -0.41
Col1a1P11087 Lrrc23-202ENSMUST00000112475 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Gm42851-201ENSMUST00000201325 1411 ntBASIC12.46□□□□□ -0.41
Col1a1P11087 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Col1a1P11087 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Col1a1P11087 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Sun1-205ENSMUST00000110883 3714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Gm22582-201ENSMUST00000102283 94 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Sfxn5-204ENSMUST00000113788 514 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Ube2l3-203ENSMUST00000115700 571 ntTSL 5 BASIC12.46□□□□□ -0.42
Col1a1P11087 Gm12489-201ENSMUST00000119364 148 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Gm11800-201ENSMUST00000120050 579 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Gm17147-201ENSMUST00000164176 432 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Mir3100-201ENSMUST00000174918 65 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Gm22616-201ENSMUST00000179783 100 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Pou1f1-205ENSMUST00000184525 1020 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 1700065O20Rik-201ENSMUST00000186872 710 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 4930515G16Rik-201ENSMUST00000199440 1256 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Nudc-ps1-201ENSMUST00000209275 551 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Gm18646-201ENSMUST00000212240 1063 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 AC100406.1-201ENSMUST00000217305 480 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Gm44975-201ENSMUST00000207435 1390 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 AC154186.1-201ENSMUST00000227711 1597 ntBASIC12.46□□□□□ -0.42
Col1a1P11087 Rdh7-201ENSMUST00000047199 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Myh3-202ENSMUST00000108689 6031 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Col1a1P11087 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
Col1a1P11087 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.42
Col1a1P11087 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Gm29358-202ENSMUST00000187941 3227 ntBASIC12.45□□□□□ -0.42
Col1a1P11087 Nbdy-204ENSMUST00000185492 1346 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.45□□□□□ -0.42
Col1a1P11087 Rpain-202ENSMUST00000108529 282 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Adig-202ENSMUST00000109484 488 ntTSL 2 BASIC12.45□□□□□ -0.42
Col1a1P11087 Snx10-202ENSMUST00000114439 968 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 0610037L13Rik-206ENSMUST00000120473 835 ntTSL 2 BASIC12.45□□□□□ -0.42
Col1a1P11087 Gm8163-201ENSMUST00000122020 1060 ntBASIC12.45□□□□□ -0.42
Col1a1P11087 Banf2os-201ENSMUST00000124061 771 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Gm2044-201ENSMUST00000130771 911 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Ubl5-203ENSMUST00000160124 501 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Col1a1P11087 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Gm27241-201ENSMUST00000183517 622 ntTSL 3 BASIC12.45□□□□□ -0.42
Col1a1P11087 Gm44155-201ENSMUST00000203923 412 ntBASIC12.45□□□□□ -0.42
Col1a1P11087 Proca1-202ENSMUST00000078099 1254 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Gm4883-201ENSMUST00000085702 528 ntBASIC12.45□□□□□ -0.42
Col1a1P11087 Lin54-210ENSMUST00000154921 3734 ntTSL 5 BASIC12.45□□□□□ -0.42
Col1a1P11087 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Acsbg1-201ENSMUST00000034822 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Mefv-202ENSMUST00000100222 3249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Uaca-201ENSMUST00000050183 4428 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Elmod3-202ENSMUST00000114069 2164 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Kcnk5-201ENSMUST00000024011 3392 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Col1a1P11087 Cd74-203ENSMUST00000167610 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Col1a1P11087 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Gm45170-201ENSMUST00000206746 1671 ntBASIC12.44□□□□□ -0.42
Col1a1P11087 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Supt20-ps-201ENSMUST00000117999 1560 ntBASIC12.44□□□□□ -0.42
Col1a1P11087 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Eya2-201ENSMUST00000063433 2460 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col1a1P11087 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms