Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm11619-201ENSMUST00000117474 237 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm12712-201ENSMUST00000120676 801 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm11502-201ENSMUST00000120917 1211 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm12453-201ENSMUST00000121981 331 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Mir6941-201ENSMUST00000184711 59 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm9916-201ENSMUST00000192943 1228 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm37447-201ENSMUST00000195625 2928 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm43667-201ENSMUST00000198616 1095 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm43401-201ENSMUST00000198829 394 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 4933402C05Rik-201ENSMUST00000208189 1035 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 AC158392.3-201ENSMUST00000224271 1284 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Pbp2-201ENSMUST00000050471 1279 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Isl1-201ENSMUST00000036060 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Csgalnact1-201ENSMUST00000078350 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Slc10a7-202ENSMUST00000209490 3485 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Mgl2-205ENSMUST00000165951 1635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm5434-202ENSMUST00000222384 1451 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm5434-201ENSMUST00000071825 1451 ntBASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Cdh20-201ENSMUST00000062528 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Saxo2-201ENSMUST00000056728 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Anks1b-233ENSMUST00000183156 4248 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Vps53Q8CCB4 Tmem237-205ENSMUST00000186794 1533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Ccdc85a-206ENSMUST00000146385 3798 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Fermt1-201ENSMUST00000038280 4915 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Tgfbrap1-201ENSMUST00000095014 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Pcdhga7-201ENSMUST00000192511 4730 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 AC174678.2-201ENSMUST00000156420 3275 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Gm16167-201ENSMUST00000160428 1065 ntBASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Gm44216-201ENSMUST00000203942 157 ntBASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Olfr1227-ps1-201ENSMUST00000215627 928 ntBASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Gm18165-201ENSMUST00000217426 928 ntBASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Fpr-rs3-201ENSMUST00000071189 1032 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Vmn1r220-201ENSMUST00000072385 897 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Fam180a-201ENSMUST00000051176 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Top3a-204ENSMUST00000120417 2318 ntTSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Rad1-202ENSMUST00000100775 4085 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Brpf1-208ENSMUST00000203577 4468 ntTSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Ido1-202ENSMUST00000110667 1656 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Eid3-201ENSMUST00000211623 1305 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Nudt7-203ENSMUST00000109109 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 4732490B19Rik-201ENSMUST00000130373 2446 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 Sh2d5-201ENSMUST00000105823 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 A330033J07Rik-201ENSMUST00000180921 2816 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Vps53Q8CCB4 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Serpinb9c-202ENSMUST00000110284 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Specc1l-201ENSMUST00000040105 5928 ntTSL 5 BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Clock-201ENSMUST00000075159 7478 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Araf-201ENSMUST00000001155 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Stk4-201ENSMUST00000018353 5232 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Ndor1-201ENSMUST00000100329 4517 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Gm17244-201ENSMUST00000192482 3416 ntBASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Gm14592-201ENSMUST00000117201 560 ntBASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Gm12663-201ENSMUST00000118481 958 ntBASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Gm15197-201ENSMUST00000120526 478 ntBASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Gm15620-201ENSMUST00000122949 270 ntBASIC12.56□□□□□ -0.4
Vps53Q8CCB4 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Vps53Q8CCB4 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 75.5 ms