Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Slc44a4-202ENSMUST00000169230 2246 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Camk2a-204ENSMUST00000115295 979 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Gm11957-201ENSMUST00000118304 779 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Gm9625-201ENSMUST00000180422 955 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 Tbc1d24-211ENSMUST00000201583 893 ntTSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 Gm18539-201ENSMUST00000204745 1090 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Gm44552-201ENSMUST00000205458 1247 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Gm6855-201ENSMUST00000206307 790 ntBASIC12.52□□□□□ -0.41
Traf1P39428 4930486N12Rik-201ENSMUST00000206668 632 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 AC153962.2-201ENSMUST00000219417 550 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Gm18499-201ENSMUST00000220808 1021 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Gm44826-201ENSMUST00000207648 2332 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Fam109b-203ENSMUST00000161178 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Txlna-201ENSMUST00000046425 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Gm19165-201ENSMUST00000204453 1982 ntBASIC12.52□□□□□ -0.41
Traf1P39428 Plekhn1-204ENSMUST00000218699 3196 ntTSL 2 BASIC12.52□□□□□ -0.41
Traf1P39428 Ccnt2-201ENSMUST00000027587 6738 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Ktn1-220ENSMUST00000190252 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Traf1P39428 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Swap70-201ENSMUST00000033325 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Drc7-201ENSMUST00000058479 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Fcgr2b-204ENSMUST00000159969 1578 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Rufy2-202ENSMUST00000119567 4130 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Traf1P39428 Anxa11-202ENSMUST00000112364 1625 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm37058-201ENSMUST00000193393 1644 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Gm6831-202ENSMUST00000213025 1673 ntBASIC12.51□□□□□ -0.41
Traf1P39428 4930432K21Rik-202ENSMUST00000118856 2366 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Gm43482-201ENSMUST00000202797 1861 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Wdcp-201ENSMUST00000053034 2892 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Wipf2-201ENSMUST00000037480 7011 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC12.51□□□□□ -0.41
Traf1P39428 Ighv13-1-201ENSMUST00000103480 294 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Cisd3-203ENSMUST00000107585 586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm15625-201ENSMUST00000117617 1093 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm8659-201ENSMUST00000120024 1084 ntBASIC12.51□□□□□ -0.41
Traf1P39428 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm11465-201ENSMUST00000127942 435 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC12.51□□□□□ -0.41
Traf1P39428 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm12906-201ENSMUST00000154610 441 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Gm25569-201ENSMUST00000157175 131 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Prr30-202ENSMUST00000187304 2104 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm37852-201ENSMUST00000193027 350 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Gm40414-201ENSMUST00000197608 481 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Lsm8-204ENSMUST00000201141 503 ntTSL 3 BASIC12.51□□□□□ -0.41
Traf1P39428 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm44640-201ENSMUST00000206894 247 ntBASIC12.51□□□□□ -0.41
Traf1P39428 AC122860.1-201ENSMUST00000217669 773 ntTSL 3 BASIC12.51□□□□□ -0.41
Traf1P39428 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm5449-201ENSMUST00000081132 357 ntBASIC12.51□□□□□ -0.41
Traf1P39428 Rims1-204ENSMUST00000097810 6362 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Tubb2b-201ENSMUST00000075774 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Lta-201ENSMUST00000025266 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Glt1d1-201ENSMUST00000118139 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Oscp1-203ENSMUST00000143712 1473 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Anxa6-202ENSMUST00000108883 2489 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Actl7a-201ENSMUST00000095079 1513 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Traf1P39428 Efcab12-201ENSMUST00000032468 2551 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Traf1P39428 Kcnma1-205ENSMUST00000145596 12094 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
Traf1P39428 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Cdkl2-201ENSMUST00000069937 3976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Traf1P39428 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Gm43014-201ENSMUST00000198568 2443 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Traf1P39428 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Slfn5os-201ENSMUST00000127074 574 ntTSL 2 BASIC12.5□□□□□ -0.41
Traf1P39428 Marcksl1-ps4-201ENSMUST00000132531 291 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Traf1P39428 Gm16547-201ENSMUST00000159474 293 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm23647-201ENSMUST00000175042 109 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Rn5s-201ENSMUST00000177555 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s108-201ENSMUST00000177575 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s121-201ENSMUST00000177589 119 ntBASIC12.5□□□□□ -0.41
Traf1P39428 Gm13278-201ENSMUST00000177771 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Traf1P39428 n-R5s146-201ENSMUST00000177889 119 ntBASIC12.5□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms