Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Lima1Q9ERG0 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.73■□□□□ 0.75
Lima1Q9ERG0 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lima1Q9ERG0 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lima1Q9ERG0 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Lima1Q9ERG0 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.72■□□□□ 0.75
Lima1Q9ERG0 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.71■□□□□ 0.75
Lima1Q9ERG0 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Lima1Q9ERG0 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lima1Q9ERG0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lima1Q9ERG0 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lima1Q9ERG0 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lima1Q9ERG0 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lima1Q9ERG0 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Lima1Q9ERG0 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Lima1Q9ERG0 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lima1Q9ERG0 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lima1Q9ERG0 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lima1Q9ERG0 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lima1Q9ERG0 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Lima1Q9ERG0 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC19.64■□□□□ 0.73
Lima1Q9ERG0 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lima1Q9ERG0 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lima1Q9ERG0 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Lima1Q9ERG0 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms