Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ddx56Q9D0R4 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ddx56Q9D0R4 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx56Q9D0R4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.07■□□□□ 0.96
Ddx56Q9D0R4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx56Q9D0R4 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx56Q9D0R4 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Ddx56Q9D0R4 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddx56Q9D0R4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddx56Q9D0R4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx56Q9D0R4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Ddx56Q9D0R4 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.05■□□□□ 0.96
Ddx56Q9D0R4 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.05■□□□□ 0.96
Ddx56Q9D0R4 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.05■□□□□ 0.96
Ddx56Q9D0R4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddx56Q9D0R4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx56Q9D0R4 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx56Q9D0R4 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx56Q9D0R4 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx56Q9D0R4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ddx56Q9D0R4 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.04■□□□□ 0.96
Ddx56Q9D0R4 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Ddx56Q9D0R4 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ddx56Q9D0R4 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Ddx56Q9D0R4 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ddx56Q9D0R4 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx56Q9D0R4 Gm12922-201ENSMUST00000120626 809 ntBASIC21■□□□□ 0.95
Ddx56Q9D0R4 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21■□□□□ 0.95
Ddx56Q9D0R4 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx56Q9D0R4 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ddx56Q9D0R4 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Ddx56Q9D0R4 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Ddx56Q9D0R4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Gm8770-201ENSMUST00000121113 1109 ntBASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Golgb1-201ENSMUST00000023534 498 ntBASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ddx56Q9D0R4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ddx56Q9D0R4 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddx56Q9D0R4 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddx56Q9D0R4 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.97■□□□□ 0.95
Ddx56Q9D0R4 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ddx56Q9D0R4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ddx56Q9D0R4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms