Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.88■□□□□ 0.61
Use1Q9CQ56 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Use1Q9CQ56 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Use1Q9CQ56 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Use1Q9CQ56 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Use1Q9CQ56 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Use1Q9CQ56 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.87■□□□□ 0.61
Use1Q9CQ56 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Use1Q9CQ56 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Use1Q9CQ56 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Use1Q9CQ56 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Use1Q9CQ56 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Use1Q9CQ56 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Use1Q9CQ56 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Use1Q9CQ56 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC18.85■□□□□ 0.61
Use1Q9CQ56 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Use1Q9CQ56 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Use1Q9CQ56 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Use1Q9CQ56 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.84■□□□□ 0.61
Use1Q9CQ56 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Use1Q9CQ56 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Use1Q9CQ56 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Use1Q9CQ56 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Use1Q9CQ56 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Use1Q9CQ56 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Use1Q9CQ56 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Use1Q9CQ56 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Use1Q9CQ56 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.81■□□□□ 0.6
Use1Q9CQ56 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.8■□□□□ 0.6
Use1Q9CQ56 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Use1Q9CQ56 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Gm7143-201ENSMUST00000222811 859 ntBASIC18.79■□□□□ 0.6
Use1Q9CQ56 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Use1Q9CQ56 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms