Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp11Q99K46 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.93■□□□□ 0.94
Usp11Q99K46 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp11Q99K46 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp11Q99K46 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp11Q99K46 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp11Q99K46 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp11Q99K46 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Usp11Q99K46 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp11Q99K46 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp11Q99K46 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp11Q99K46 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Usp11Q99K46 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.91■□□□□ 0.94
Usp11Q99K46 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.91■□□□□ 0.94
Usp11Q99K46 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.91■□□□□ 0.94
Usp11Q99K46 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Usp11Q99K46 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Usp11Q99K46 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp11Q99K46 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp11Q99K46 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp11Q99K46 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Usp11Q99K46 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Usp11Q99K46 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp11Q99K46 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
Usp11Q99K46 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.94
Usp11Q99K46 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Usp11Q99K46 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Usp11Q99K46 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp11Q99K46 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Usp11Q99K46 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp11Q99K46 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp11Q99K46 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.89■□□□□ 0.93
Usp11Q99K46 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.89■□□□□ 0.93
Usp11Q99K46 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Usp11Q99K46 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp11Q99K46 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Usp11Q99K46 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Usp11Q99K46 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.88■□□□□ 0.93
Usp11Q99K46 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
Usp11Q99K46 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Golph3-202ENSMUST00000226517 2359 ntBASIC20.88■□□□□ 0.93
Usp11Q99K46 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.88■□□□□ 0.93
Usp11Q99K46 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Usp11Q99K46 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp11Q99K46 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp11Q99K46 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp11Q99K46 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp11Q99K46 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp11Q99K46 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.87■□□□□ 0.93
Usp11Q99K46 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.87■□□□□ 0.93
Usp11Q99K46 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.87■□□□□ 0.93
Usp11Q99K46 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp11Q99K46 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.87■□□□□ 0.93
Usp11Q99K46 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.87■□□□□ 0.93
Usp11Q99K46 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.87■□□□□ 0.93
Usp11Q99K46 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp11Q99K46 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.86■□□□□ 0.93
Usp11Q99K46 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Usp11Q99K46 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Usp11Q99K46 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Usp11Q99K46 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Usp11Q99K46 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Usp11Q99K46 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp11Q99K46 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp11Q99K46 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp11Q99K46 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Usp11Q99K46 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp11Q99K46 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp11Q99K46 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.85■□□□□ 0.93
Usp11Q99K46 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Usp11Q99K46 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms