Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Six1Q62231 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Six1Q62231 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Six1Q62231 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Six1Q62231 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Six1Q62231 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Six1Q62231 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Six1Q62231 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Six1Q62231 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
Six1Q62231 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Six1Q62231 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Six1Q62231 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Six1Q62231 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Six1Q62231 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Six1Q62231 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Six1Q62231 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Six1Q62231 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC20.63■□□□□ 0.89
Six1Q62231 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Six1Q62231 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Six1Q62231 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Six1Q62231 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Six1Q62231 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Six1Q62231 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Six1Q62231 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Six1Q62231 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.62■□□□□ 0.89
Six1Q62231 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Six1Q62231 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Six1Q62231 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.62■□□□□ 0.89
Six1Q62231 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Six1Q62231 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Six1Q62231 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Six1Q62231 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Six1Q62231 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.62■□□□□ 0.89
Six1Q62231 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Six1Q62231 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Six1Q62231 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Six1Q62231 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Six1Q62231 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Six1Q62231 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.61■□□□□ 0.89
Six1Q62231 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Six1Q62231 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six1Q62231 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six1Q62231 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Six1Q62231 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Six1Q62231 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC20.6■□□□□ 0.89
Six1Q62231 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.6■□□□□ 0.89
Six1Q62231 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Six1Q62231 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Six1Q62231 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Six1Q62231 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six1Q62231 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Six1Q62231 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.58■□□□□ 0.89
Six1Q62231 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six1Q62231 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six1Q62231 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Six1Q62231 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six1Q62231 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Six1Q62231 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Six1Q62231 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC20.58■□□□□ 0.89
Six1Q62231 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.58■□□□□ 0.89
Six1Q62231 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Six1Q62231 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.58■□□□□ 0.88
Six1Q62231 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Six1Q62231 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.58■□□□□ 0.88
Six1Q62231 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Six1Q62231 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six1Q62231 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC20.57■□□□□ 0.88
Six1Q62231 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.57■□□□□ 0.88
Six1Q62231 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six1Q62231 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Six1Q62231 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.56■□□□□ 0.88
Six1Q62231 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Six1Q62231 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Six1Q62231 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.55■□□□□ 0.88
Six1Q62231 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Six1Q62231 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Six1Q62231 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms