Protein–RNA interactions for Protein: Q61112

Sdf4, 45 kDa calcium-binding protein, mousemouse

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdf4Q61112 Mir6236-201ENSMUST00000184437 123 ntBASIC20.3■□□□□ 0.84
Sdf4Q61112 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Sdf4Q61112 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdf4Q61112 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdf4Q61112 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdf4Q61112 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdf4Q61112 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Sdf4Q61112 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.3■□□□□ 0.84
Sdf4Q61112 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.29■□□□□ 0.84
Sdf4Q61112 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Sdf4Q61112 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.29■□□□□ 0.84
Sdf4Q61112 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Sdf4Q61112 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Gm9847-201ENSMUST00000052528 599 ntBASIC20.29■□□□□ 0.84
Sdf4Q61112 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Sdf4Q61112 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Sdf4Q61112 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Sdf4Q61112 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Sdf4Q61112 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdf4Q61112 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.28■□□□□ 0.84
Sdf4Q61112 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Sdf4Q61112 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdf4Q61112 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Sdf4Q61112 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.28■□□□□ 0.84
Sdf4Q61112 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdf4Q61112 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Sdf4Q61112 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Sdf4Q61112 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Sdf4Q61112 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdf4Q61112 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.27■□□□□ 0.84
Sdf4Q61112 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdf4Q61112 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Sdf4Q61112 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Sdf4Q61112 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
Sdf4Q61112 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Sdf4Q61112 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
Sdf4Q61112 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdf4Q61112 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sdf4Q61112 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Sdf4Q61112 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sdf4Q61112 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.25■□□□□ 0.83
Sdf4Q61112 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdf4Q61112 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdf4Q61112 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdf4Q61112 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdf4Q61112 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdf4Q61112 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdf4Q61112 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdf4Q61112 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.24■□□□□ 0.83
Sdf4Q61112 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC20.23■□□□□ 0.83
Sdf4Q61112 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdf4Q61112 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdf4Q61112 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdf4Q61112 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdf4Q61112 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.22■□□□□ 0.83
Sdf4Q61112 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdf4Q61112 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdf4Q61112 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdf4Q61112 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdf4Q61112 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
Sdf4Q61112 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sdf4Q61112 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Sdf4Q61112 Gm13241-201ENSMUST00000094493 780 ntBASIC20.21■□□□□ 0.83
Sdf4Q61112 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdf4Q61112 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sdf4Q61112 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdf4Q61112 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
Sdf4Q61112 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdf4Q61112 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.2■□□□□ 0.82
Sdf4Q61112 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdf4Q61112 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdf4Q61112 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.2■□□□□ 0.82
Sdf4Q61112 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sdf4Q61112 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.2■□□□□ 0.82
Sdf4Q61112 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sdf4Q61112 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms