Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Upf3aQ3ULJ3 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3aQ3ULJ3 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf3aQ3ULJ3 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC21.2■□□□□ 0.98
Upf3aQ3ULJ3 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf3aQ3ULJ3 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Upf3aQ3ULJ3 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Upf3aQ3ULJ3 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Upf3aQ3ULJ3 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Gm17641-201ENSMUST00000166328 2350 ntBASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Upf3aQ3ULJ3 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Upf3aQ3ULJ3 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Upf3aQ3ULJ3 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Upf3aQ3ULJ3 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 CT025689.6-201ENSMUST00000224991 1104 ntBASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Upf3aQ3ULJ3 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Gm9988-201ENSMUST00000069786 435 ntBASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Upf3aQ3ULJ3 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Upf3aQ3ULJ3 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Upf3aQ3ULJ3 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms