Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Limch1Q3UH68 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Limch1Q3UH68 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
Limch1Q3UH68 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Limch1Q3UH68 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Limch1Q3UH68 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Limch1Q3UH68 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Limch1Q3UH68 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Limch1Q3UH68 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
Limch1Q3UH68 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Limch1Q3UH68 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Limch1Q3UH68 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Limch1Q3UH68 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
Limch1Q3UH68 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Limch1Q3UH68 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Limch1Q3UH68 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Limch1Q3UH68 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Limch1Q3UH68 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Limch1Q3UH68 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Limch1Q3UH68 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
Limch1Q3UH68 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Limch1Q3UH68 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Limch1Q3UH68 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC23.51■■□□□ 1.35
Limch1Q3UH68 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Limch1Q3UH68 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
Limch1Q3UH68 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Limch1Q3UH68 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
Limch1Q3UH68 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC23.49■■□□□ 1.35
Limch1Q3UH68 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC23.49■■□□□ 1.35
Limch1Q3UH68 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Limch1Q3UH68 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC23.48■■□□□ 1.35
Limch1Q3UH68 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
Limch1Q3UH68 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
Limch1Q3UH68 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Limch1Q3UH68 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Limch1Q3UH68 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Limch1Q3UH68 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Limch1Q3UH68 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC23.47■■□□□ 1.35
Limch1Q3UH68 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Limch1Q3UH68 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Limch1Q3UH68 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
Limch1Q3UH68 Gm9207-201ENSMUST00000198773 1115 ntBASIC23.46■■□□□ 1.35
Limch1Q3UH68 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Limch1Q3UH68 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Limch1Q3UH68 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC23.46■■□□□ 1.35
Limch1Q3UH68 Gm34220-201ENSMUST00000223001 2709 ntBASIC23.46■■□□□ 1.35
Limch1Q3UH68 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Limch1Q3UH68 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Limch1Q3UH68 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Limch1Q3UH68 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Limch1Q3UH68 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC23.45■■□□□ 1.34
Limch1Q3UH68 Notumos-201ENSMUST00000151998 2659 ntBASIC23.45■■□□□ 1.34
Limch1Q3UH68 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC23.45■■□□□ 1.34
Limch1Q3UH68 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Limch1Q3UH68 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
Limch1Q3UH68 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Limch1Q3UH68 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC23.44■■□□□ 1.34
Limch1Q3UH68 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Limch1Q3UH68 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC23.44■■□□□ 1.34
Limch1Q3UH68 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 871.9 ms