Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC31.4■■■□□ 2.62
Cux1P53564 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
Cux1P53564 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC31.4■■■□□ 2.62
Cux1P53564 Gm27801-201ENSMUST00000184174 223 ntBASIC31.39■■■□□ 2.62
Cux1P53564 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC31.39■■■□□ 2.62
Cux1P53564 Ap3s1-204ENSMUST00000225520 957 ntBASIC31.39■■■□□ 2.62
Cux1P53564 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC31.39■■■□□ 2.62
Cux1P53564 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Cux1P53564 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Cux1P53564 Gm13234-201ENSMUST00000120010 747 ntBASIC31.39■■■□□ 2.61
Cux1P53564 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC31.39■■■□□ 2.61
Cux1P53564 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC31.39■■■□□ 2.61
Cux1P53564 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
Cux1P53564 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC31.38■■■□□ 2.61
Cux1P53564 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Cux1P53564 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Cux1P53564 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
Cux1P53564 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Cux1P53564 Gm42778-201ENSMUST00000199644 553 ntBASIC31.38■■■□□ 2.61
Cux1P53564 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
Cux1P53564 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC31.38■■■□□ 2.61
Cux1P53564 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
Cux1P53564 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Cux1P53564 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
Cux1P53564 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Cux1P53564 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
Cux1P53564 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Cux1P53564 AC122428.2-201ENSMUST00000216321 1832 ntBASIC31.37■■■□□ 2.61
Cux1P53564 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Cux1P53564 Gm12933-201ENSMUST00000120203 872 ntBASIC31.36■■■□□ 2.61
Cux1P53564 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC31.36■■■□□ 2.61
Cux1P53564 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC31.36■■■□□ 2.61
Cux1P53564 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Cux1P53564 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Cux1P53564 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Cux1P53564 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Cux1P53564 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Cux1P53564 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Cux1P53564 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
Cux1P53564 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
Cux1P53564 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Cux1P53564 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Cux1P53564 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC31.34■■■□□ 2.61
Cux1P53564 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Cux1P53564 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
Cux1P53564 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Cux1P53564 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
Cux1P53564 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC31.34■■■□□ 2.61
Cux1P53564 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
Cux1P53564 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
Cux1P53564 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Cux1P53564 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC31.33■■■□□ 2.61
Cux1P53564 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
Cux1P53564 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
Cux1P53564 Gm9988-201ENSMUST00000069786 435 ntBASIC31.32■■■□□ 2.6
Cux1P53564 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Cux1P53564 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
Cux1P53564 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC31.31■■■□□ 2.6
Cux1P53564 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
Cux1P53564 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Cux1P53564 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC31.3■■■□□ 2.6
Cux1P53564 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC31.29■■■□□ 2.6
Cux1P53564 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC31.29■■■□□ 2.6
Cux1P53564 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
Cux1P53564 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Cux1P53564 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
Cux1P53564 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Cux1P53564 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC31.28■■■□□ 2.6
Cux1P53564 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Cux1P53564 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
Cux1P53564 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC31.28■■■□□ 2.6
Cux1P53564 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Cux1P53564 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Cux1P53564 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Cux1P53564 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
Cux1P53564 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Cux1P53564 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Cux1P53564 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
Cux1P53564 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Cux1P53564 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Cux1P53564 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC31.25■■■□□ 2.59
Cux1P53564 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Cux1P53564 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC31.25■■■□□ 2.59
Cux1P53564 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
Cux1P53564 CT030146.1-201ENSMUST00000220919 217 ntBASIC31.25■■■□□ 2.59
Cux1P53564 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cux1P53564 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Cux1P53564 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms