Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Msx1P13297 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
Msx1P13297 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Msx1P13297 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC18.93■□□□□ 0.62
Msx1P13297 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Msx1P13297 Gm7291-201ENSMUST00000199147 382 ntBASIC18.93■□□□□ 0.62
Msx1P13297 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Msx1P13297 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msx1P13297 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msx1P13297 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Msx1P13297 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msx1P13297 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Msx1P13297 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Msx1P13297 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Msx1P13297 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Msx1P13297 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Msx1P13297 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC18.91■□□□□ 0.62
Msx1P13297 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.91■□□□□ 0.62
Msx1P13297 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Msx1P13297 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.91■□□□□ 0.62
Msx1P13297 Gm43173-201ENSMUST00000202246 593 ntBASIC18.91■□□□□ 0.62
Msx1P13297 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msx1P13297 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Msx1P13297 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msx1P13297 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Msx1P13297 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.9■□□□□ 0.62
Msx1P13297 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Msx1P13297 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Msx1P13297 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Msx1P13297 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Msx1P13297 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Msx1P13297 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Msx1P13297 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Msx1P13297 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Msx1P13297 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Msx1P13297 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.88■□□□□ 0.61
Msx1P13297 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.88■□□□□ 0.61
Msx1P13297 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC18.88■□□□□ 0.61
Msx1P13297 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC18.88■□□□□ 0.61
Msx1P13297 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Msx1P13297 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.87■□□□□ 0.61
Msx1P13297 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18.87■□□□□ 0.61
Msx1P13297 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Msx1P13297 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.86■□□□□ 0.61
Msx1P13297 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msx1P13297 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msx1P13297 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msx1P13297 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.86■□□□□ 0.61
Msx1P13297 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.86■□□□□ 0.61
Msx1P13297 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Msx1P13297 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Msx1P13297 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Msx1P13297 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msx1P13297 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msx1P13297 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Msx1P13297 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msx1P13297 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Msx1P13297 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.85■□□□□ 0.61
Msx1P13297 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Msx1P13297 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Msx1P13297 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Msx1P13297 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Msx1P13297 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Msx1P13297 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms