Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.71■■□□□ 1.07
RaraP11416 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.71■■□□□ 1.07
RaraP11416 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
RaraP11416 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
RaraP11416 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RaraP11416 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
RaraP11416 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
RaraP11416 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RaraP11416 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.7■■□□□ 1.06
RaraP11416 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21.7■■□□□ 1.06
RaraP11416 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.7■■□□□ 1.06
RaraP11416 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
RaraP11416 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
RaraP11416 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
RaraP11416 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.69■■□□□ 1.06
RaraP11416 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RaraP11416 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
RaraP11416 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.69■■□□□ 1.06
RaraP11416 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.68■■□□□ 1.06
RaraP11416 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.68■■□□□ 1.06
RaraP11416 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
RaraP11416 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RaraP11416 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
RaraP11416 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
RaraP11416 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
RaraP11416 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RaraP11416 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RaraP11416 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RaraP11416 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RaraP11416 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RaraP11416 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.67■■□□□ 1.06
RaraP11416 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
RaraP11416 Gm18755-201ENSMUST00000218030 1099 ntBASIC21.67■■□□□ 1.06
RaraP11416 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RaraP11416 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RaraP11416 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RaraP11416 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RaraP11416 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RaraP11416 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RaraP11416 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RaraP11416 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RaraP11416 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RaraP11416 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RaraP11416 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RaraP11416 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RaraP11416 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RaraP11416 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RaraP11416 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RaraP11416 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RaraP11416 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RaraP11416 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RaraP11416 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RaraP11416 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RaraP11416 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RaraP11416 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RaraP11416 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
RaraP11416 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.64■■□□□ 1.05
RaraP11416 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
RaraP11416 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.63■■□□□ 1.05
RaraP11416 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RaraP11416 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.62■■□□□ 1.05
RaraP11416 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
RaraP11416 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.62■■□□□ 1.05
RaraP11416 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
RaraP11416 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.61■■□□□ 1.05
RaraP11416 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.61■■□□□ 1.05
RaraP11416 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
RaraP11416 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
RaraP11416 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
RaraP11416 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RaraP11416 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RaraP11416 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.6■■□□□ 1.05
RaraP11416 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RaraP11416 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
RaraP11416 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
RaraP11416 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RaraP11416 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RaraP11416 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC21.59■■□□□ 1.05
RaraP11416 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RaraP11416 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RaraP11416 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms