Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC23.83■■□□□ 1.41
Col1a1P11087 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col1a1P11087 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC23.82■■□□□ 1.4
Col1a1P11087 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
Col1a1P11087 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC23.81■■□□□ 1.4
Col1a1P11087 Nespas-201ENSMUST00000143738 1083 ntBASIC23.81■■□□□ 1.4
Col1a1P11087 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Gm12441-201ENSMUST00000121806 588 ntBASIC23.81■■□□□ 1.4
Col1a1P11087 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC23.81■■□□□ 1.4
Col1a1P11087 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col1a1P11087 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Col1a1P11087 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Col1a1P11087 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col1a1P11087 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col1a1P11087 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col1a1P11087 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col1a1P11087 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC23.79■■□□□ 1.4
Col1a1P11087 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col1a1P11087 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.79■■□□□ 1.4
Col1a1P11087 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
Col1a1P11087 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col1a1P11087 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col1a1P11087 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC23.78■■□□□ 1.4
Col1a1P11087 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC23.78■■□□□ 1.4
Col1a1P11087 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col1a1P11087 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col1a1P11087 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col1a1P11087 Gm44949-201ENSMUST00000206423 1450 ntBASIC23.78■■□□□ 1.4
Col1a1P11087 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col1a1P11087 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col1a1P11087 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC23.77■■□□□ 1.4
Col1a1P11087 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC23.77■■□□□ 1.4
Col1a1P11087 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Col1a1P11087 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Col1a1P11087 Gm37415-201ENSMUST00000192265 2054 ntBASIC23.77■■□□□ 1.4
Col1a1P11087 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.77■■□□□ 1.4
Col1a1P11087 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC23.77■■□□□ 1.39
Col1a1P11087 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC23.76■■□□□ 1.39
Col1a1P11087 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
Col1a1P11087 Gm7514-201ENSMUST00000209475 934 ntBASIC23.76■■□□□ 1.39
Col1a1P11087 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col1a1P11087 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col1a1P11087 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col1a1P11087 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col1a1P11087 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Col1a1P11087 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col1a1P11087 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col1a1P11087 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC23.75■■□□□ 1.39
Col1a1P11087 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col1a1P11087 Gm42555-201ENSMUST00000199304 1039 ntBASIC23.75■■□□□ 1.39
Col1a1P11087 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col1a1P11087 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col1a1P11087 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Col1a1P11087 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC23.74■■□□□ 1.39
Col1a1P11087 Gm10653-202ENSMUST00000139570 835 ntBASIC23.74■■□□□ 1.39
Col1a1P11087 Mir5133-201ENSMUST00000174955 77 ntBASIC23.74■■□□□ 1.39
Col1a1P11087 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Col1a1P11087 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Col1a1P11087 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Col1a1P11087 Gm10571-201ENSMUST00000097869 1638 ntBASIC23.72■■□□□ 1.39
Col1a1P11087 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
Col1a1P11087 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC23.72■■□□□ 1.39
Col1a1P11087 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
Col1a1P11087 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col1a1P11087 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
Col1a1P11087 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Col1a1P11087 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Col1a1P11087 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Col1a1P11087 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Col1a1P11087 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC23.71■■□□□ 1.39
Col1a1P11087 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Col1a1P11087 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Col1a1P11087 Gm4968-201ENSMUST00000071458 858 ntBASIC23.7■■□□□ 1.38
Col1a1P11087 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col1a1P11087 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col1a1P11087 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col1a1P11087 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col1a1P11087 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Col1a1P11087 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col1a1P11087 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms