Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.42■□□□□ 0.7
Cacna1bO55017 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Cacna1bO55017 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cacna1bO55017 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cacna1bO55017 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cacna1bO55017 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Cacna1bO55017 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.42■□□□□ 0.7
Cacna1bO55017 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cacna1bO55017 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cacna1bO55017 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cacna1bO55017 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
Cacna1bO55017 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cacna1bO55017 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cacna1bO55017 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.41■□□□□ 0.7
Cacna1bO55017 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cacna1bO55017 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cacna1bO55017 Gm12441-201ENSMUST00000121806 588 ntBASIC19.41■□□□□ 0.7
Cacna1bO55017 Gm27801-201ENSMUST00000184174 223 ntBASIC19.41■□□□□ 0.7
Cacna1bO55017 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cacna1bO55017 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cacna1bO55017 Gm12527-201ENSMUST00000117967 564 ntBASIC19.4■□□□□ 0.7
Cacna1bO55017 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
Cacna1bO55017 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC19.4■□□□□ 0.7
Cacna1bO55017 Gm22240-201ENSMUST00000175225 82 ntBASIC19.4■□□□□ 0.7
Cacna1bO55017 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cacna1bO55017 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.4■□□□□ 0.7
Cacna1bO55017 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cacna1bO55017 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cacna1bO55017 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cacna1bO55017 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Cacna1bO55017 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.4■□□□□ 0.7
Cacna1bO55017 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
Cacna1bO55017 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cacna1bO55017 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cacna1bO55017 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Cacna1bO55017 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC19.39■□□□□ 0.69
Cacna1bO55017 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cacna1bO55017 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cacna1bO55017 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Cacna1bO55017 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.39■□□□□ 0.69
Cacna1bO55017 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.39■□□□□ 0.69
Cacna1bO55017 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cacna1bO55017 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cacna1bO55017 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Cacna1bO55017 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.38■□□□□ 0.69
Cacna1bO55017 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Cacna1bO55017 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Cacna1bO55017 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cacna1bO55017 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cacna1bO55017 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Cacna1bO55017 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.37■□□□□ 0.69
Cacna1bO55017 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cacna1bO55017 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cacna1bO55017 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.37■□□□□ 0.69
Cacna1bO55017 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC19.37■□□□□ 0.69
Cacna1bO55017 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Cacna1bO55017 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Cacna1bO55017 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Cacna1bO55017 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Cacna1bO55017 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Cacna1bO55017 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cacna1bO55017 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cacna1bO55017 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cacna1bO55017 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Cacna1bO55017 Gm10653-202ENSMUST00000139570 835 ntBASIC19.36■□□□□ 0.69
Cacna1bO55017 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC19.36■□□□□ 0.69
Cacna1bO55017 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC19.35■□□□□ 0.69
Cacna1bO55017 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.35■□□□□ 0.69
Cacna1bO55017 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Cacna1bO55017 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Cacna1bO55017 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.34■□□□□ 0.69
Cacna1bO55017 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
Cacna1bO55017 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Cacna1bO55017 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Cacna1bO55017 AC164883.3-201ENSMUST00000227396 1774 ntBASIC19.33■□□□□ 0.69
Cacna1bO55017 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Cacna1bO55017 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
Cacna1bO55017 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cacna1bO55017 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC19.33■□□□□ 0.68
Cacna1bO55017 Gm7514-201ENSMUST00000209475 934 ntBASIC19.33■□□□□ 0.68
Cacna1bO55017 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.33■□□□□ 0.68
Cacna1bO55017 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cacna1bO55017 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cacna1bO55017 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cacna1bO55017 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms