Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Hmgb3O54879 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Hmgb3O54879 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Hmgb3O54879 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb3O54879 AC158990.1-201ENSMUST00000221450 2016 ntBASIC16.59■□□□□ 0.25
Hmgb3O54879 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb3O54879 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Hmgb3O54879 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Hmgb3O54879 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb3O54879 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Hmgb3O54879 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Hmgb3O54879 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC16.58■□□□□ 0.25
Hmgb3O54879 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC16.58■□□□□ 0.25
Hmgb3O54879 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
Hmgb3O54879 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC16.58■□□□□ 0.24
Hmgb3O54879 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 AC152827.1-201ENSMUST00000221143 2189 ntBASIC16.58■□□□□ 0.24
Hmgb3O54879 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Hmgb3O54879 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Hmgb3O54879 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Hmgb3O54879 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb3O54879 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb3O54879 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb3O54879 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb3O54879 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.57■□□□□ 0.24
Hmgb3O54879 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb3O54879 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Hmgb3O54879 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb3O54879 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb3O54879 Gm6311-201ENSMUST00000073790 878 ntBASIC16.56■□□□□ 0.24
Hmgb3O54879 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb3O54879 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Hmgb3O54879 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb3O54879 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb3O54879 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Hmgb3O54879 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Hmgb3O54879 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Hmgb3O54879 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Hmgb3O54879 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC16.54■□□□□ 0.24
Hmgb3O54879 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Hmgb3O54879 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Hmgb3O54879 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Hmgb3O54879 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
Hmgb3O54879 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Hmgb3O54879 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC16.53■□□□□ 0.24
Hmgb3O54879 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.53■□□□□ 0.24
Hmgb3O54879 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Hmgb3O54879 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Hmgb3O54879 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.52■□□□□ 0.24
Hmgb3O54879 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms