Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.67■□□□□ 0.9
Sdc4O35988 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Sdc4O35988 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.67■□□□□ 0.9
Sdc4O35988 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.67■□□□□ 0.9
Sdc4O35988 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Sdc4O35988 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Sdc4O35988 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Sdc4O35988 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Gm26833-201ENSMUST00000180899 440 ntBASIC20.66■□□□□ 0.9
Sdc4O35988 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Sdc4O35988 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.65■□□□□ 0.9
Sdc4O35988 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Sdc4O35988 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Sdc4O35988 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Sdc4O35988 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.64■□□□□ 0.9
Sdc4O35988 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sdc4O35988 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.64■□□□□ 0.89
Sdc4O35988 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Sdc4O35988 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.64■□□□□ 0.89
Sdc4O35988 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
Sdc4O35988 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Sdc4O35988 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
Sdc4O35988 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Sdc4O35988 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC20.63■□□□□ 0.89
Sdc4O35988 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Sdc4O35988 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.62■□□□□ 0.89
Sdc4O35988 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.62■□□□□ 0.89
Sdc4O35988 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Sdc4O35988 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Sdc4O35988 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Sdc4O35988 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
Sdc4O35988 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sdc4O35988 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.61■□□□□ 0.89
Sdc4O35988 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Sdc4O35988 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.61■□□□□ 0.89
Sdc4O35988 Gm18284-201ENSMUST00000172604 624 ntBASIC20.61■□□□□ 0.89
Sdc4O35988 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Sdc4O35988 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Sdc4O35988 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Sdc4O35988 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Sdc4O35988 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sdc4O35988 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.59■□□□□ 0.89
Sdc4O35988 Gm8495-201ENSMUST00000188740 694 ntBASIC20.59■□□□□ 0.89
Sdc4O35988 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.59■□□□□ 0.89
Sdc4O35988 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sdc4O35988 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sdc4O35988 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Sdc4O35988 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Sdc4O35988 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Sdc4O35988 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Sdc4O35988 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
Sdc4O35988 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Sdc4O35988 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sdc4O35988 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.58■□□□□ 0.89
Sdc4O35988 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Sdc4O35988 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Sdc4O35988 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Sdc4O35988 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdc4O35988 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdc4O35988 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Sdc4O35988 Smad6-203ENSMUST00000179458 273 ntBASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms