Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Hfm1D3Z4R1 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Hfm1D3Z4R1 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Hfm1D3Z4R1 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC28.72■■■□□ 2.19
Hfm1D3Z4R1 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Hfm1D3Z4R1 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Hfm1D3Z4R1 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Hfm1D3Z4R1 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC28.71■■■□□ 2.19
Hfm1D3Z4R1 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC28.71■■■□□ 2.19
Hfm1D3Z4R1 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Hfm1D3Z4R1 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Hfm1D3Z4R1 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Hfm1D3Z4R1 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC28.7■■■□□ 2.19
Hfm1D3Z4R1 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Hfm1D3Z4R1 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
Hfm1D3Z4R1 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC28.7■■■□□ 2.18
Hfm1D3Z4R1 Gm43403-201ENSMUST00000198011 1786 ntBASIC28.7■■■□□ 2.18
Hfm1D3Z4R1 Mir5133-201ENSMUST00000174955 77 ntBASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Tmprss5-205ENSMUST00000170246 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
Hfm1D3Z4R1 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC28.68■■■□□ 2.18
Hfm1D3Z4R1 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Hfm1D3Z4R1 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Hfm1D3Z4R1 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Hfm1D3Z4R1 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
Hfm1D3Z4R1 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Hfm1D3Z4R1 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
Hfm1D3Z4R1 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC28.67■■■□□ 2.18
Hfm1D3Z4R1 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
Hfm1D3Z4R1 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
Hfm1D3Z4R1 Gm5913-201ENSMUST00000119397 1399 ntBASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Hfm1D3Z4R1 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC28.65■■■□□ 2.18
Hfm1D3Z4R1 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
Hfm1D3Z4R1 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
Hfm1D3Z4R1 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
Hfm1D3Z4R1 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Hfm1D3Z4R1 Gm12527-201ENSMUST00000117967 564 ntBASIC28.63■■■□□ 2.17
Hfm1D3Z4R1 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Hfm1D3Z4R1 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Hfm1D3Z4R1 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Hfm1D3Z4R1 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Hfm1D3Z4R1 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
Hfm1D3Z4R1 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Hfm1D3Z4R1 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Hfm1D3Z4R1 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Hfm1D3Z4R1 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Hfm1D3Z4R1 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
Hfm1D3Z4R1 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
Hfm1D3Z4R1 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC28.6■■■□□ 2.17
Hfm1D3Z4R1 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Hfm1D3Z4R1 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Hfm1D3Z4R1 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
Hfm1D3Z4R1 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
Hfm1D3Z4R1 Gm10571-201ENSMUST00000097869 1638 ntBASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Gm20760-201ENSMUST00000179197 648 ntBASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Hfm1D3Z4R1 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 H3f3aos-201ENSMUST00000097448 2905 ntBASIC28.58■■■□□ 2.17
Hfm1D3Z4R1 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Hfm1D3Z4R1 Gm13148-201ENSMUST00000118892 745 ntBASIC28.57■■■□□ 2.16
Hfm1D3Z4R1 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Hfm1D3Z4R1 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Hfm1D3Z4R1 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Hfm1D3Z4R1 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Hfm1D3Z4R1 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC28.54■■■□□ 2.16
Retrieved 100 of 76,532 protein–RNA pairs in 340 ms